Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0836

Experiment: D-Cellobiose (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0835 and Ga0059261_0836 are separated by 146 nucleotidesGa0059261_0836 and Ga0059261_0837 are separated by 138 nucleotides Ga0059261_0835: Ga0059261_0835 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 872,512 to 874,260 _0835 Ga0059261_0836: Ga0059261_0836 - Beta-lactamase class C and other penicillin binding proteins, at 874,407 to 875,633 _0836 Ga0059261_0837: Ga0059261_0837 - 3-hydroxyacyl-CoA dehydrogenase, at 875,772 to 877,802 _0837 Position (kb) 874 875 876Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 873.488 kb on + strand, within Ga0059261_0835at 873.522 kb on + strand, within Ga0059261_0835at 873.522 kb on + strandat 873.523 kb on - strand, within Ga0059261_0835at 873.523 kb on - strand, within Ga0059261_0835at 873.587 kb on + strand, within Ga0059261_0835at 873.587 kb on + strand, within Ga0059261_0835at 873.587 kb on + strand, within Ga0059261_0835at 873.785 kb on + strand, within Ga0059261_0835at 873.785 kb on + strand, within Ga0059261_0835at 873.786 kb on - strand, within Ga0059261_0835at 873.836 kb on + strand, within Ga0059261_0835at 873.837 kb on - strand, within Ga0059261_0835at 874.207 kb on + strandat 874.324 kb on - strandat 874.401 kb on + strandat 874.402 kb on - strandat 874.407 kb on - strandat 874.494 kb on + strandat 874.495 kb on - strandat 874.495 kb on - strandat 874.495 kb on - strandat 874.495 kb on - strandat 874.743 kb on + strand, within Ga0059261_0836at 874.743 kb on + strand, within Ga0059261_0836at 874.743 kb on + strand, within Ga0059261_0836at 874.743 kb on + strand, within Ga0059261_0836at 874.743 kb on + strand, within Ga0059261_0836at 874.744 kb on - strand, within Ga0059261_0836at 874.744 kb on - strand, within Ga0059261_0836at 874.744 kb on - strand, within Ga0059261_0836at 874.745 kb on + strand, within Ga0059261_0836at 874.745 kb on + strand, within Ga0059261_0836at 874.745 kb on + strand, within Ga0059261_0836at 874.746 kb on - strand, within Ga0059261_0836at 874.746 kb on - strand, within Ga0059261_0836at 874.839 kb on + strand, within Ga0059261_0836at 874.839 kb on + strand, within Ga0059261_0836at 874.839 kb on + strand, within Ga0059261_0836at 874.839 kb on + strand, within Ga0059261_0836at 874.840 kb on - strand, within Ga0059261_0836at 874.840 kb on - strand, within Ga0059261_0836at 874.840 kb on - strand, within Ga0059261_0836at 874.902 kb on + strand, within Ga0059261_0836at 874.902 kb on + strand, within Ga0059261_0836at 874.902 kb on + strand, within Ga0059261_0836at 874.903 kb on - strand, within Ga0059261_0836at 874.913 kb on + strand, within Ga0059261_0836at 874.913 kb on + strand, within Ga0059261_0836at 874.914 kb on - strand, within Ga0059261_0836at 874.983 kb on + strand, within Ga0059261_0836at 874.983 kb on + strand, within Ga0059261_0836at 874.984 kb on - strand, within Ga0059261_0836at 874.984 kb on - strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.169 kb on + strand, within Ga0059261_0836at 875.170 kb on - strand, within Ga0059261_0836at 875.170 kb on - strand, within Ga0059261_0836at 875.170 kb on - strand, within Ga0059261_0836at 875.170 kb on - strand, within Ga0059261_0836at 875.170 kb on - strand, within Ga0059261_0836at 875.253 kb on + strand, within Ga0059261_0836at 875.350 kb on + strand, within Ga0059261_0836at 875.351 kb on - strand, within Ga0059261_0836at 875.351 kb on - strand, within Ga0059261_0836at 875.351 kb on - strand, within Ga0059261_0836at 875.351 kb on - strand, within Ga0059261_0836at 875.490 kb on + strand, within Ga0059261_0836at 875.491 kb on - strand, within Ga0059261_0836at 875.491 kb on - strand, within Ga0059261_0836at 875.491 kb on - strand, within Ga0059261_0836at 875.616 kb on + strandat 875.616 kb on + strandat 875.616 kb on + strandat 875.617 kb on - strandat 875.617 kb on - strandat 875.617 kb on - strandat 875.650 kb on + strandat 875.650 kb on + strandat 876.110 kb on + strand, within Ga0059261_0837at 876.111 kb on - strand, within Ga0059261_0837at 876.327 kb on + strand, within Ga0059261_0837at 876.327 kb on + strand, within Ga0059261_0837at 876.327 kb on + strand, within Ga0059261_0837at 876.327 kb on + strand, within Ga0059261_0837at 876.328 kb on - strand, within Ga0059261_0837at 876.328 kb on - strand, within Ga0059261_0837at 876.328 kb on - strand, within Ga0059261_0837at 876.328 kb on - strand, within Ga0059261_0837at 876.498 kb on + strand, within Ga0059261_0837at 876.499 kb on - strand, within Ga0059261_0837

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); no added vitamins
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873,488 + Ga0059261_0835 0.56 -0.2
873,522 + Ga0059261_0835 0.58 +0.3
873,522 + -0.8
873,523 - Ga0059261_0835 0.58 -0.6
873,523 - Ga0059261_0835 0.58 +0.6
873,587 + Ga0059261_0835 0.61 +0.3
873,587 + Ga0059261_0835 0.61 -0.1
873,587 + Ga0059261_0835 0.61 +0.1
873,785 + Ga0059261_0835 0.73 -0.0
873,785 + Ga0059261_0835 0.73 -2.8
873,786 - Ga0059261_0835 0.73 +1.1
873,836 + Ga0059261_0835 0.76 -0.2
873,837 - Ga0059261_0835 0.76 -3.4
874,207 + -0.0
874,324 - +0.0
874,401 + -0.1
874,402 - -1.6
874,407 - -1.8
874,494 + -0.1
874,495 - -2.8
874,495 - +0.3
874,495 - -0.5
874,495 - -1.0
874,743 + Ga0059261_0836 0.27 +0.5
874,743 + Ga0059261_0836 0.27 +0.6
874,743 + Ga0059261_0836 0.27 -1.1
874,743 + Ga0059261_0836 0.27 -0.7
874,743 + Ga0059261_0836 0.27 -0.1
874,744 - Ga0059261_0836 0.27 +0.1
874,744 - Ga0059261_0836 0.27 -1.8
874,744 - Ga0059261_0836 0.27 -0.8
874,745 + Ga0059261_0836 0.28 +0.2
874,745 + Ga0059261_0836 0.28 -0.7
874,745 + Ga0059261_0836 0.28 -1.2
874,746 - Ga0059261_0836 0.28 +1.7
874,746 - Ga0059261_0836 0.28 -2.4
874,839 + Ga0059261_0836 0.35 +0.6
874,839 + Ga0059261_0836 0.35 +0.1
874,839 + Ga0059261_0836 0.35 +0.1
874,839 + Ga0059261_0836 0.35 -0.7
874,840 - Ga0059261_0836 0.35 -0.1
874,840 - Ga0059261_0836 0.35 -2.4
874,840 - Ga0059261_0836 0.35 +2.1
874,902 + Ga0059261_0836 0.40 -0.6
874,902 + Ga0059261_0836 0.40 +0.0
874,902 + Ga0059261_0836 0.40 -0.3
874,903 - Ga0059261_0836 0.40 -0.3
874,913 + Ga0059261_0836 0.41 +1.1
874,913 + Ga0059261_0836 0.41 -0.4
874,914 - Ga0059261_0836 0.41 -1.2
874,983 + Ga0059261_0836 0.47 -0.5
874,983 + Ga0059261_0836 0.47 +0.8
874,984 - Ga0059261_0836 0.47 -0.6
874,984 - Ga0059261_0836 0.47 -2.2
875,169 + Ga0059261_0836 0.62 -0.4
875,169 + Ga0059261_0836 0.62 +0.7
875,169 + Ga0059261_0836 0.62 -1.7
875,169 + Ga0059261_0836 0.62 +0.1
875,169 + Ga0059261_0836 0.62 +0.5
875,169 + Ga0059261_0836 0.62 -2.3
875,169 + Ga0059261_0836 0.62 +0.6
875,169 + Ga0059261_0836 0.62 -0.2
875,169 + Ga0059261_0836 0.62 -0.4
875,169 + Ga0059261_0836 0.62 -1.6
875,170 - Ga0059261_0836 0.62 -0.8
875,170 - Ga0059261_0836 0.62 -0.3
875,170 - Ga0059261_0836 0.62 -1.2
875,170 - Ga0059261_0836 0.62 -0.7
875,170 - Ga0059261_0836 0.62 -0.3
875,253 + Ga0059261_0836 0.69 +1.4
875,350 + Ga0059261_0836 0.77 -0.6
875,351 - Ga0059261_0836 0.77 -0.6
875,351 - Ga0059261_0836 0.77 -0.5
875,351 - Ga0059261_0836 0.77 -1.4
875,351 - Ga0059261_0836 0.77 -3.0
875,490 + Ga0059261_0836 0.88 -0.5
875,491 - Ga0059261_0836 0.88 -0.5
875,491 - Ga0059261_0836 0.88 -0.3
875,491 - Ga0059261_0836 0.88 -1.0
875,616 + -0.1
875,616 + -0.1
875,616 + +0.4
875,617 - -0.6
875,617 - +0.3
875,617 - -0.2
875,650 + +1.1
875,650 + +0.3
876,110 + Ga0059261_0837 0.17 -1.3
876,111 - Ga0059261_0837 0.17 +0.2
876,327 + Ga0059261_0837 0.27 -3.3
876,327 + Ga0059261_0837 0.27 -0.9
876,327 + Ga0059261_0837 0.27 -1.3
876,327 + Ga0059261_0837 0.27 -1.6
876,328 - Ga0059261_0837 0.27 -1.5
876,328 - Ga0059261_0837 0.27 -1.4
876,328 - Ga0059261_0837 0.27 +0.5
876,328 - Ga0059261_0837 0.27 -2.9
876,498 + Ga0059261_0837 0.36 -0.7
876,499 - Ga0059261_0837 0.36 -0.6

Or see this region's nucleotide sequence