Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0825

Experiment: D-Cellobiose (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0823 and Ga0059261_0824 are separated by 94 nucleotidesGa0059261_0824 and Ga0059261_0825 are separated by 105 nucleotidesGa0059261_0825 and Ga0059261_0826 are separated by 152 nucleotidesGa0059261_0826 and Ga0059261_0827 are separated by 217 nucleotides Ga0059261_0823: Ga0059261_0823 - hypothetical protein, at 864,379 to 864,885 _0823 Ga0059261_0824: Ga0059261_0824 - DNA-binding regulatory protein, YebC/PmpR family, at 864,980 to 865,723 _0824 Ga0059261_0825: Ga0059261_0825 - Uncharacterized conserved protein, at 865,829 to 866,155 _0825 Ga0059261_0826: Ga0059261_0826 - Uncharacterized protein conserved in bacteria, at 866,308 to 866,547 _0826 Ga0059261_0827: Ga0059261_0827 - hypothetical protein, at 866,765 to 867,160 _0827 Position (kb) 865 866 867Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 865.018 kb on - strandat 865.483 kb on - strand, within Ga0059261_0824at 865.759 kb on - strandat 865.759 kb on - strandat 865.788 kb on + strandat 865.803 kb on + strandat 865.803 kb on + strandat 865.804 kb on - strandat 865.822 kb on + strandat 865.822 kb on + strandat 865.823 kb on - strandat 865.823 kb on - strandat 865.823 kb on - strandat 865.905 kb on + strand, within Ga0059261_0825at 866.007 kb on + strand, within Ga0059261_0825at 866.007 kb on + strand, within Ga0059261_0825at 866.007 kb on + strand, within Ga0059261_0825at 866.007 kb on + strand, within Ga0059261_0825at 866.007 kb on + strand, within Ga0059261_0825at 866.008 kb on - strand, within Ga0059261_0825at 866.008 kb on - strand, within Ga0059261_0825at 866.106 kb on + strand, within Ga0059261_0825at 866.157 kb on + strandat 866.226 kb on + strandat 866.226 kb on + strandat 866.227 kb on - strandat 866.227 kb on - strandat 866.309 kb on + strandat 866.309 kb on + strandat 866.309 kb on + strandat 866.309 kb on + strandat 866.309 kb on + strandat 866.309 kb on + strandat 866.309 kb on + strandat 866.309 kb on + strandat 866.310 kb on - strandat 866.310 kb on - strandat 866.310 kb on - strandat 866.310 kb on - strandat 866.310 kb on - strandat 866.310 kb on - strandat 866.563 kb on - strandat 866.563 kb on - strandat 866.642 kb on + strandat 866.668 kb on + strandat 866.681 kb on + strandat 866.682 kb on - strandat 866.682 kb on - strandat 866.693 kb on - strandat 866.693 kb on - strandat 866.693 kb on - strandat 866.693 kb on - strandat 866.872 kb on + strand, within Ga0059261_0827at 866.873 kb on - strand, within Ga0059261_0827at 867.060 kb on - strand, within Ga0059261_0827at 867.152 kb on + strandat 867.152 kb on + strandat 867.152 kb on + strandat 867.152 kb on + strandat 867.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); no added vitamins
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865,018 - +3.2
865,483 - Ga0059261_0824 0.68 +0.2
865,759 - +0.1
865,759 - +0.4
865,788 + -2.1
865,803 + +0.0
865,803 + -1.2
865,804 - +0.1
865,822 + +0.9
865,822 + +0.2
865,823 - -1.7
865,823 - +1.9
865,823 - +1.0
865,905 + Ga0059261_0825 0.23 +1.4
866,007 + Ga0059261_0825 0.54 -1.1
866,007 + Ga0059261_0825 0.54 +0.6
866,007 + Ga0059261_0825 0.54 +1.3
866,007 + Ga0059261_0825 0.54 +0.5
866,007 + Ga0059261_0825 0.54 -1.0
866,008 - Ga0059261_0825 0.55 +0.8
866,008 - Ga0059261_0825 0.55 +0.3
866,106 + Ga0059261_0825 0.85 -1.1
866,157 + +0.6
866,226 + +0.0
866,226 + +1.3
866,227 - -2.6
866,227 - -1.5
866,309 + +0.7
866,309 + +0.8
866,309 + -0.2
866,309 + +0.6
866,309 + -0.2
866,309 + +0.4
866,309 + +0.4
866,309 + +0.9
866,310 - +0.7
866,310 - -0.0
866,310 - -1.7
866,310 - +0.1
866,310 - -0.6
866,310 - +0.8
866,563 - -3.6
866,563 - -0.4
866,642 + +1.1
866,668 + -0.7
866,681 + -1.6
866,682 - -0.6
866,682 - +2.4
866,693 - +1.1
866,693 - -1.1
866,693 - +0.1
866,693 - +0.6
866,872 + Ga0059261_0827 0.27 +0.4
866,873 - Ga0059261_0827 0.27 +0.3
867,060 - Ga0059261_0827 0.74 -0.6
867,152 + +0.6
867,152 + -0.1
867,152 + +0.9
867,152 + -0.3
867,153 - +0.4

Or see this region's nucleotide sequence