Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0774

Experiment: D-Cellobiose (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0772 and Ga0059261_0773 overlap by 4 nucleotidesGa0059261_0773 and Ga0059261_0774 overlap by 4 nucleotidesGa0059261_0774 and Ga0059261_0775 overlap by 4 nucleotides Ga0059261_0772: Ga0059261_0772 - Tannase and feruloyl esterase, at 801,760 to 803,352 _0772 Ga0059261_0773: Ga0059261_0773 - Esterase/lipase, at 803,349 to 804,239 _0773 Ga0059261_0774: Ga0059261_0774 - Carboxylesterase type B, at 804,236 to 805,696 _0774 Ga0059261_0775: Ga0059261_0775 - Alpha-L-rhamnosidase N-terminal domain/Bacterial alpha-L-rhamnosidase, at 805,693 to 808,968 _0775 Position (kb) 804 805 806Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 803.251 kb on - strandat 803.728 kb on + strand, within Ga0059261_0773at 803.728 kb on + strand, within Ga0059261_0773at 803.836 kb on + strand, within Ga0059261_0773at 803.837 kb on - strand, within Ga0059261_0773at 803.837 kb on - strand, within Ga0059261_0773at 803.837 kb on - strand, within Ga0059261_0773at 803.885 kb on - strand, within Ga0059261_0773at 804.222 kb on + strandat 804.222 kb on + strandat 804.222 kb on + strandat 804.222 kb on + strandat 804.222 kb on + strandat 804.223 kb on - strandat 804.311 kb on - strandat 804.408 kb on + strand, within Ga0059261_0774at 804.408 kb on + strand, within Ga0059261_0774at 804.408 kb on + strand, within Ga0059261_0774at 804.408 kb on + strand, within Ga0059261_0774at 804.408 kb on + strand, within Ga0059261_0774at 804.408 kb on + strand, within Ga0059261_0774at 804.409 kb on - strand, within Ga0059261_0774at 804.409 kb on - strand, within Ga0059261_0774at 804.409 kb on - strand, within Ga0059261_0774at 804.409 kb on - strandat 804.537 kb on + strand, within Ga0059261_0774at 804.537 kb on + strand, within Ga0059261_0774at 804.537 kb on + strand, within Ga0059261_0774at 804.538 kb on - strand, within Ga0059261_0774at 804.549 kb on + strand, within Ga0059261_0774at 804.549 kb on + strand, within Ga0059261_0774at 804.550 kb on - strand, within Ga0059261_0774at 804.633 kb on + strand, within Ga0059261_0774at 804.660 kb on + strand, within Ga0059261_0774at 804.660 kb on + strand, within Ga0059261_0774at 804.660 kb on + strand, within Ga0059261_0774at 804.660 kb on + strand, within Ga0059261_0774at 804.660 kb on + strand, within Ga0059261_0774at 804.661 kb on - strand, within Ga0059261_0774at 804.661 kb on - strand, within Ga0059261_0774at 804.661 kb on - strand, within Ga0059261_0774at 804.661 kb on - strand, within Ga0059261_0774at 804.661 kb on - strandat 804.661 kb on - strand, within Ga0059261_0774at 804.661 kb on - strand, within Ga0059261_0774at 804.763 kb on + strand, within Ga0059261_0774at 804.763 kb on + strand, within Ga0059261_0774at 804.763 kb on + strand, within Ga0059261_0774at 804.763 kb on + strand, within Ga0059261_0774at 804.763 kb on + strand, within Ga0059261_0774at 804.764 kb on - strand, within Ga0059261_0774at 804.764 kb on - strand, within Ga0059261_0774at 804.764 kb on - strand, within Ga0059261_0774at 804.834 kb on + strand, within Ga0059261_0774at 804.861 kb on + strand, within Ga0059261_0774at 804.862 kb on - strand, within Ga0059261_0774at 804.862 kb on - strand, within Ga0059261_0774at 804.862 kb on - strand, within Ga0059261_0774at 804.862 kb on - strand, within Ga0059261_0774at 804.862 kb on - strand, within Ga0059261_0774at 805.254 kb on + strand, within Ga0059261_0774at 805.254 kb on + strand, within Ga0059261_0774at 805.255 kb on - strand, within Ga0059261_0774at 805.255 kb on - strand, within Ga0059261_0774at 805.298 kb on - strand, within Ga0059261_0774at 805.569 kb on + strandat 805.576 kb on + strandat 805.576 kb on + strandat 805.577 kb on - strandat 805.577 kb on - strandat 805.682 kb on - strandat 805.742 kb on + strandat 805.742 kb on + strandat 805.743 kb on - strandat 805.743 kb on - strandat 805.751 kb on + strandat 805.751 kb on + strandat 805.752 kb on - strandat 805.752 kb on - strandat 805.979 kb on + strandat 805.979 kb on + strandat 805.979 kb on + strandat 805.979 kb on + strandat 805.980 kb on - strandat 805.980 kb on - strandat 806.045 kb on + strandat 806.045 kb on + strand, within Ga0059261_0775at 806.045 kb on + strand, within Ga0059261_0775at 806.045 kb on + strand, within Ga0059261_0775at 806.045 kb on + strand, within Ga0059261_0775at 806.045 kb on + strand, within Ga0059261_0775at 806.046 kb on - strand, within Ga0059261_0775at 806.046 kb on - strand, within Ga0059261_0775at 806.046 kb on - strand, within Ga0059261_0775at 806.046 kb on - strand, within Ga0059261_0775at 806.046 kb on - strand, within Ga0059261_0775at 806.177 kb on + strand, within Ga0059261_0775at 806.177 kb on + strand, within Ga0059261_0775at 806.178 kb on - strand, within Ga0059261_0775at 806.178 kb on - strand, within Ga0059261_0775at 806.178 kb on - strand, within Ga0059261_0775at 806.214 kb on + strand, within Ga0059261_0775at 806.214 kb on - strand, within Ga0059261_0775at 806.405 kb on + strand, within Ga0059261_0775at 806.405 kb on + strand, within Ga0059261_0775at 806.405 kb on + strand, within Ga0059261_0775at 806.405 kb on + strand, within Ga0059261_0775at 806.406 kb on - strand, within Ga0059261_0775at 806.406 kb on - strand, within Ga0059261_0775at 806.406 kb on - strand, within Ga0059261_0775at 806.406 kb on - strand, within Ga0059261_0775at 806.406 kb on - strand, within Ga0059261_0775at 806.438 kb on + strand, within Ga0059261_0775at 806.510 kb on + strand, within Ga0059261_0775at 806.510 kb on + strand, within Ga0059261_0775at 806.510 kb on + strand, within Ga0059261_0775at 806.510 kb on + strand, within Ga0059261_0775at 806.511 kb on - strand, within Ga0059261_0775at 806.511 kb on - strand, within Ga0059261_0775at 806.511 kb on - strand, within Ga0059261_0775at 806.511 kb on - strand, within Ga0059261_0775at 806.622 kb on + strand, within Ga0059261_0775at 806.622 kb on + strand, within Ga0059261_0775at 806.623 kb on - strand, within Ga0059261_0775at 806.624 kb on + strand, within Ga0059261_0775at 806.624 kb on + strand, within Ga0059261_0775at 806.624 kb on + strand, within Ga0059261_0775at 806.624 kb on + strand, within Ga0059261_0775at 806.624 kb on + strand, within Ga0059261_0775at 806.624 kb on + strand, within Ga0059261_0775at 806.624 kb on + strand, within Ga0059261_0775at 806.624 kb on + strand, within Ga0059261_0775at 806.625 kb on - strand, within Ga0059261_0775at 806.625 kb on - strand, within Ga0059261_0775at 806.625 kb on - strand, within Ga0059261_0775at 806.625 kb on - strand, within Ga0059261_0775at 806.625 kb on - strand, within Ga0059261_0775at 806.625 kb on - strand, within Ga0059261_0775at 806.625 kb on - strand, within Ga0059261_0775at 806.625 kb on - strand, within Ga0059261_0775at 806.625 kb on - strand, within Ga0059261_0775at 806.625 kb on - strand, within Ga0059261_0775at 806.634 kb on + strand, within Ga0059261_0775at 806.635 kb on - strand, within Ga0059261_0775at 806.636 kb on + strand, within Ga0059261_0775at 806.636 kb on + strand, within Ga0059261_0775at 806.636 kb on + strand, within Ga0059261_0775at 806.693 kb on + strand, within Ga0059261_0775at 806.693 kb on + strand, within Ga0059261_0775at 806.693 kb on + strand, within Ga0059261_0775at 806.693 kb on + strand, within Ga0059261_0775at 806.693 kb on + strand, within Ga0059261_0775at 806.694 kb on - strand, within Ga0059261_0775at 806.694 kb on - strand, within Ga0059261_0775at 806.694 kb on - strand, within Ga0059261_0775at 806.694 kb on - strand, within Ga0059261_0775at 806.694 kb on - strand, within Ga0059261_0775at 806.694 kb on - strand, within Ga0059261_0775

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); no added vitamins
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803,251 - -0.9
803,728 + Ga0059261_0773 0.43 +0.0
803,728 + Ga0059261_0773 0.43 -0.6
803,836 + Ga0059261_0773 0.55 +0.6
803,837 - Ga0059261_0773 0.55 -0.3
803,837 - Ga0059261_0773 0.55 +0.2
803,837 - Ga0059261_0773 0.55 -0.5
803,885 - Ga0059261_0773 0.60 +0.3
804,222 + -0.7
804,222 + +1.0
804,222 + +1.1
804,222 + +0.3
804,222 + -2.1
804,223 - -1.3
804,311 - -0.5
804,408 + Ga0059261_0774 0.12 +0.3
804,408 + Ga0059261_0774 0.12 +1.6
804,408 + Ga0059261_0774 0.12 +0.9
804,408 + Ga0059261_0774 0.12 -0.9
804,408 + Ga0059261_0774 0.12 +0.4
804,408 + Ga0059261_0774 0.12 -1.7
804,409 - Ga0059261_0774 0.12 -0.4
804,409 - Ga0059261_0774 0.12 -2.9
804,409 - Ga0059261_0774 0.12 +0.3
804,409 - -1.8
804,537 + Ga0059261_0774 0.21 +0.4
804,537 + Ga0059261_0774 0.21 -2.3
804,537 + Ga0059261_0774 0.21 +0.1
804,538 - Ga0059261_0774 0.21 -2.0
804,549 + Ga0059261_0774 0.21 +0.5
804,549 + Ga0059261_0774 0.21 -1.1
804,550 - Ga0059261_0774 0.21 +0.5
804,633 + Ga0059261_0774 0.27 +0.3
804,660 + Ga0059261_0774 0.29 -0.5
804,660 + Ga0059261_0774 0.29 +1.8
804,660 + Ga0059261_0774 0.29 -0.8
804,660 + Ga0059261_0774 0.29 -0.2
804,660 + Ga0059261_0774 0.29 +0.5
804,661 - Ga0059261_0774 0.29 -0.2
804,661 - Ga0059261_0774 0.29 -0.6
804,661 - Ga0059261_0774 0.29 -1.6
804,661 - Ga0059261_0774 0.29 -0.4
804,661 - +1.0
804,661 - Ga0059261_0774 0.29 -0.5
804,661 - Ga0059261_0774 0.29 +1.6
804,763 + Ga0059261_0774 0.36 +1.4
804,763 + Ga0059261_0774 0.36 +0.5
804,763 + Ga0059261_0774 0.36 -0.2
804,763 + Ga0059261_0774 0.36 +1.1
804,763 + Ga0059261_0774 0.36 +0.7
804,764 - Ga0059261_0774 0.36 +0.6
804,764 - Ga0059261_0774 0.36 +0.4
804,764 - Ga0059261_0774 0.36 -1.3
804,834 + Ga0059261_0774 0.41 -0.8
804,861 + Ga0059261_0774 0.43 -0.8
804,862 - Ga0059261_0774 0.43 +0.4
804,862 - Ga0059261_0774 0.43 +0.2
804,862 - Ga0059261_0774 0.43 +1.1
804,862 - Ga0059261_0774 0.43 +1.4
804,862 - Ga0059261_0774 0.43 -0.2
805,254 + Ga0059261_0774 0.70 +0.8
805,254 + Ga0059261_0774 0.70 +0.9
805,255 - Ga0059261_0774 0.70 +0.2
805,255 - Ga0059261_0774 0.70 -0.4
805,298 - Ga0059261_0774 0.73 -0.5
805,569 + -2.2
805,576 + -0.3
805,576 + +0.6
805,577 - -0.4
805,577 - -2.3
805,682 - +0.4
805,742 + +0.2
805,742 + -2.5
805,743 - +0.5
805,743 - -1.2
805,751 + -1.3
805,751 + -0.6
805,752 - -0.5
805,752 - -1.1
805,979 + -0.2
805,979 + +0.7
805,979 + -0.8
805,979 + +0.5
805,980 - -0.1
805,980 - +1.1
806,045 + -1.5
806,045 + Ga0059261_0775 0.11 +0.8
806,045 + Ga0059261_0775 0.11 +0.4
806,045 + Ga0059261_0775 0.11 -0.7
806,045 + Ga0059261_0775 0.11 +0.0
806,045 + Ga0059261_0775 0.11 +0.3
806,046 - Ga0059261_0775 0.11 -0.4
806,046 - Ga0059261_0775 0.11 -0.3
806,046 - Ga0059261_0775 0.11 +0.4
806,046 - Ga0059261_0775 0.11 +0.1
806,046 - Ga0059261_0775 0.11 -0.5
806,177 + Ga0059261_0775 0.15 +0.8
806,177 + Ga0059261_0775 0.15 -2.1
806,178 - Ga0059261_0775 0.15 +1.2
806,178 - Ga0059261_0775 0.15 -3.2
806,178 - Ga0059261_0775 0.15 -0.5
806,214 + Ga0059261_0775 0.16 +0.4
806,214 - Ga0059261_0775 0.16 +0.7
806,405 + Ga0059261_0775 0.22 -3.6
806,405 + Ga0059261_0775 0.22 +0.6
806,405 + Ga0059261_0775 0.22 +0.2
806,405 + Ga0059261_0775 0.22 -2.2
806,406 - Ga0059261_0775 0.22 +0.3
806,406 - Ga0059261_0775 0.22 +1.1
806,406 - Ga0059261_0775 0.22 +0.2
806,406 - Ga0059261_0775 0.22 -0.9
806,406 - Ga0059261_0775 0.22 -2.0
806,438 + Ga0059261_0775 0.23 +1.4
806,510 + Ga0059261_0775 0.25 +1.9
806,510 + Ga0059261_0775 0.25 +0.6
806,510 + Ga0059261_0775 0.25 -0.6
806,510 + Ga0059261_0775 0.25 +0.3
806,511 - Ga0059261_0775 0.25 -0.9
806,511 - Ga0059261_0775 0.25 -1.7
806,511 - Ga0059261_0775 0.25 -1.0
806,511 - Ga0059261_0775 0.25 +1.0
806,622 + Ga0059261_0775 0.28 +0.3
806,622 + Ga0059261_0775 0.28 +1.0
806,623 - Ga0059261_0775 0.28 -0.8
806,624 + Ga0059261_0775 0.28 +0.3
806,624 + Ga0059261_0775 0.28 -1.4
806,624 + Ga0059261_0775 0.28 -0.2
806,624 + Ga0059261_0775 0.28 +1.6
806,624 + Ga0059261_0775 0.28 +0.2
806,624 + Ga0059261_0775 0.28 +0.9
806,624 + Ga0059261_0775 0.28 -0.2
806,624 + Ga0059261_0775 0.28 +0.3
806,625 - Ga0059261_0775 0.28 -3.0
806,625 - Ga0059261_0775 0.28 +0.8
806,625 - Ga0059261_0775 0.28 -0.3
806,625 - Ga0059261_0775 0.28 +1.8
806,625 - Ga0059261_0775 0.28 -0.2
806,625 - Ga0059261_0775 0.28 +0.3
806,625 - Ga0059261_0775 0.28 -1.3
806,625 - Ga0059261_0775 0.28 -2.3
806,625 - Ga0059261_0775 0.28 +0.8
806,625 - Ga0059261_0775 0.28 +0.4
806,634 + Ga0059261_0775 0.29 -0.0
806,635 - Ga0059261_0775 0.29 +0.3
806,636 + Ga0059261_0775 0.29 +0.4
806,636 + Ga0059261_0775 0.29 +0.4
806,636 + Ga0059261_0775 0.29 -2.5
806,693 + Ga0059261_0775 0.31 -3.1
806,693 + Ga0059261_0775 0.31 -3.6
806,693 + Ga0059261_0775 0.31 +0.0
806,693 + Ga0059261_0775 0.31 -1.3
806,693 + Ga0059261_0775 0.31 +0.5
806,694 - Ga0059261_0775 0.31 +1.5
806,694 - Ga0059261_0775 0.31 +1.1
806,694 - Ga0059261_0775 0.31 -2.1
806,694 - Ga0059261_0775 0.31 +1.7
806,694 - Ga0059261_0775 0.31 +0.4
806,694 - Ga0059261_0775 0.31 -0.3

Or see this region's nucleotide sequence