Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0487

Experiment: D-Cellobiose (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0486 and Ga0059261_0487 are separated by 109 nucleotidesGa0059261_0487 and Ga0059261_0488 are separated by 113 nucleotidesGa0059261_0488 and Ga0059261_0489 are separated by 13 nucleotidesGa0059261_0489 and Ga0059261_0490 are separated by 27 nucleotides Ga0059261_0486: Ga0059261_0486 - TonB-dependent siderophore receptor, at 478,057 to 480,237 _0486 Ga0059261_0487: Ga0059261_0487 - Superoxide dismutase, at 480,347 to 481,060 _0487 Ga0059261_0488: Ga0059261_0488 - MerC mercury resistance protein, at 481,174 to 481,551 _0488 Ga0059261_0489: Ga0059261_0489 - Fe2+/Zn2+ uptake regulation proteins, at 481,565 to 482,011 _0489 Ga0059261_0490: Ga0059261_0490 - Peptidase S46, at 482,039 to 484,165 _0490 Position (kb) 480 481 482Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 479.390 kb on + strand, within Ga0059261_0486at 479.539 kb on + strand, within Ga0059261_0486at 479.539 kb on + strand, within Ga0059261_0486at 479.540 kb on - strand, within Ga0059261_0486at 479.540 kb on - strand, within Ga0059261_0486at 479.540 kb on - strand, within Ga0059261_0486at 479.575 kb on + strand, within Ga0059261_0486at 479.576 kb on - strand, within Ga0059261_0486at 479.576 kb on - strand, within Ga0059261_0486at 479.576 kb on - strand, within Ga0059261_0486at 479.576 kb on - strand, within Ga0059261_0486at 479.576 kb on - strand, within Ga0059261_0486at 479.719 kb on + strand, within Ga0059261_0486at 479.719 kb on + strand, within Ga0059261_0486at 479.886 kb on + strand, within Ga0059261_0486at 479.887 kb on - strand, within Ga0059261_0486at 479.887 kb on - strand, within Ga0059261_0486at 479.887 kb on - strand, within Ga0059261_0486at 479.971 kb on + strand, within Ga0059261_0486at 479.971 kb on + strand, within Ga0059261_0486at 479.971 kb on + strand, within Ga0059261_0486at 479.985 kb on + strand, within Ga0059261_0486at 479.985 kb on + strand, within Ga0059261_0486at 479.985 kb on + strand, within Ga0059261_0486at 480.048 kb on + strandat 480.049 kb on - strandat 480.067 kb on + strandat 480.067 kb on + strandat 480.067 kb on + strandat 480.068 kb on - strandat 480.094 kb on + strandat 480.094 kb on + strandat 480.095 kb on - strandat 480.151 kb on + strandat 480.151 kb on + strandat 480.151 kb on + strandat 480.151 kb on + strandat 480.151 kb on + strandat 480.151 kb on + strandat 480.152 kb on - strandat 480.152 kb on - strandat 480.152 kb on - strandat 480.152 kb on - strandat 480.160 kb on + strandat 480.160 kb on + strandat 480.161 kb on - strandat 480.161 kb on - strandat 480.311 kb on + strandat 480.311 kb on + strandat 480.311 kb on + strandat 480.311 kb on + strandat 480.423 kb on + strand, within Ga0059261_0487at 480.423 kb on + strandat 480.424 kb on - strand, within Ga0059261_0487at 480.453 kb on + strand, within Ga0059261_0487at 480.453 kb on + strand, within Ga0059261_0487at 480.453 kb on + strand, within Ga0059261_0487at 480.454 kb on - strand, within Ga0059261_0487at 480.454 kb on - strand, within Ga0059261_0487at 480.454 kb on - strand, within Ga0059261_0487at 480.456 kb on + strand, within Ga0059261_0487at 480.456 kb on + strand, within Ga0059261_0487at 480.456 kb on + strand, within Ga0059261_0487at 480.456 kb on + strand, within Ga0059261_0487at 480.456 kb on + strand, within Ga0059261_0487at 480.456 kb on + strand, within Ga0059261_0487at 480.456 kb on + strand, within Ga0059261_0487at 480.456 kb on + strand, within Ga0059261_0487at 480.456 kb on + strandat 480.456 kb on + strand, within Ga0059261_0487at 480.457 kb on - strand, within Ga0059261_0487at 480.457 kb on - strand, within Ga0059261_0487at 480.457 kb on - strand, within Ga0059261_0487at 480.457 kb on - strand, within Ga0059261_0487at 480.457 kb on - strand, within Ga0059261_0487at 480.457 kb on - strand, within Ga0059261_0487at 480.457 kb on - strand, within Ga0059261_0487at 480.457 kb on - strand, within Ga0059261_0487at 480.609 kb on - strand, within Ga0059261_0487at 480.867 kb on + strandat 480.867 kb on + strand, within Ga0059261_0487at 480.867 kb on + strand, within Ga0059261_0487at 480.867 kb on + strand, within Ga0059261_0487at 480.868 kb on - strand, within Ga0059261_0487at 480.868 kb on - strand, within Ga0059261_0487at 480.868 kb on - strand, within Ga0059261_0487at 480.868 kb on - strand, within Ga0059261_0487at 480.868 kb on - strand, within Ga0059261_0487at 480.868 kb on - strand, within Ga0059261_0487at 480.868 kb on - strand, within Ga0059261_0487at 480.868 kb on - strand, within Ga0059261_0487at 480.943 kb on - strand, within Ga0059261_0487at 481.048 kb on + strandat 481.048 kb on + strandat 481.049 kb on - strandat 481.049 kb on - strandat 481.080 kb on - strandat 481.080 kb on - strandat 481.080 kb on - strandat 481.274 kb on + strand, within Ga0059261_0488at 481.274 kb on + strand, within Ga0059261_0488at 481.274 kb on + strand, within Ga0059261_0488at 481.274 kb on + strand, within Ga0059261_0488at 481.275 kb on - strand, within Ga0059261_0488at 481.275 kb on - strand, within Ga0059261_0488at 481.378 kb on + strand, within Ga0059261_0488at 481.379 kb on - strand, within Ga0059261_0488at 481.397 kb on + strand, within Ga0059261_0488at 481.397 kb on + strand, within Ga0059261_0488at 481.397 kb on + strand, within Ga0059261_0488at 481.397 kb on + strand, within Ga0059261_0488at 481.398 kb on - strand, within Ga0059261_0488at 481.532 kb on + strandat 481.532 kb on + strandat 481.532 kb on + strandat 481.532 kb on + strandat 481.532 kb on + strandat 481.533 kb on - strandat 481.533 kb on - strandat 481.533 kb on - strandat 481.533 kb on - strandat 481.533 kb on - strandat 481.550 kb on - strandat 481.550 kb on - strandat 481.550 kb on - strandat 481.644 kb on + strand, within Ga0059261_0489at 481.644 kb on + strand, within Ga0059261_0489at 481.644 kb on + strand, within Ga0059261_0489at 481.644 kb on + strand, within Ga0059261_0489at 481.644 kb on + strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.652 kb on + strand, within Ga0059261_0489at 481.652 kb on + strand, within Ga0059261_0489at 481.652 kb on + strand, within Ga0059261_0489at 481.652 kb on + strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.674 kb on - strand, within Ga0059261_0489at 481.733 kb on + strand, within Ga0059261_0489at 481.734 kb on - strand, within Ga0059261_0489at 481.734 kb on - strand, within Ga0059261_0489at 481.734 kb on - strand, within Ga0059261_0489at 481.859 kb on - strand, within Ga0059261_0489at 481.944 kb on - strand, within Ga0059261_0489at 481.944 kb on - strandat 481.944 kb on - strand, within Ga0059261_0489at 481.944 kb on - strand, within Ga0059261_0489at 481.944 kb on - strand, within Ga0059261_0489at 482.014 kb on + strandat 482.015 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); no added vitamins
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479,390 + Ga0059261_0486 0.61 +0.4
479,539 + Ga0059261_0486 0.68 -1.2
479,539 + Ga0059261_0486 0.68 -0.1
479,540 - Ga0059261_0486 0.68 +0.3
479,540 - Ga0059261_0486 0.68 +0.5
479,540 - Ga0059261_0486 0.68 +0.0
479,575 + Ga0059261_0486 0.70 +1.5
479,576 - Ga0059261_0486 0.70 +1.0
479,576 - Ga0059261_0486 0.70 +0.5
479,576 - Ga0059261_0486 0.70 -0.6
479,576 - Ga0059261_0486 0.70 -0.0
479,576 - Ga0059261_0486 0.70 -1.8
479,719 + Ga0059261_0486 0.76 -0.4
479,719 + Ga0059261_0486 0.76 -0.5
479,886 + Ga0059261_0486 0.84 +1.1
479,887 - Ga0059261_0486 0.84 +1.3
479,887 - Ga0059261_0486 0.84 -0.6
479,887 - Ga0059261_0486 0.84 +1.7
479,971 + Ga0059261_0486 0.88 +0.6
479,971 + Ga0059261_0486 0.88 +1.0
479,971 + Ga0059261_0486 0.88 -1.6
479,985 + Ga0059261_0486 0.88 +2.2
479,985 + Ga0059261_0486 0.88 +0.9
479,985 + Ga0059261_0486 0.88 -0.4
480,048 + -0.7
480,049 - -0.1
480,067 + +0.0
480,067 + +0.2
480,067 + +0.7
480,068 - +0.3
480,094 + +0.7
480,094 + -0.1
480,095 - +0.1
480,151 + +0.4
480,151 + +0.8
480,151 + +1.0
480,151 + -0.3
480,151 + -2.0
480,151 + +0.3
480,152 - -0.3
480,152 - -0.2
480,152 - -0.2
480,152 - +1.0
480,160 + +0.2
480,160 + -0.3
480,161 - +0.3
480,161 - -0.5
480,311 + -0.0
480,311 + +0.5
480,311 + +0.3
480,311 + -0.0
480,423 + Ga0059261_0487 0.11 -0.3
480,423 + -2.1
480,424 - Ga0059261_0487 0.11 -0.8
480,453 + Ga0059261_0487 0.15 -0.8
480,453 + Ga0059261_0487 0.15 +0.8
480,453 + Ga0059261_0487 0.15 +0.3
480,454 - Ga0059261_0487 0.15 -1.1
480,454 - Ga0059261_0487 0.15 +1.5
480,454 - Ga0059261_0487 0.15 -0.6
480,456 + Ga0059261_0487 0.15 -0.6
480,456 + Ga0059261_0487 0.15 -0.4
480,456 + Ga0059261_0487 0.15 -2.5
480,456 + Ga0059261_0487 0.15 -0.4
480,456 + Ga0059261_0487 0.15 -0.0
480,456 + Ga0059261_0487 0.15 +1.5
480,456 + Ga0059261_0487 0.15 +0.1
480,456 + Ga0059261_0487 0.15 -3.7
480,456 + -1.8
480,456 + Ga0059261_0487 0.15 -3.1
480,457 - Ga0059261_0487 0.15 +0.1
480,457 - Ga0059261_0487 0.15 -0.4
480,457 - Ga0059261_0487 0.15 -0.8
480,457 - Ga0059261_0487 0.15 -0.4
480,457 - Ga0059261_0487 0.15 -2.0
480,457 - Ga0059261_0487 0.15 +1.0
480,457 - Ga0059261_0487 0.15 +0.8
480,457 - Ga0059261_0487 0.15 +0.1
480,609 - Ga0059261_0487 0.37 +0.5
480,867 + -2.0
480,867 + Ga0059261_0487 0.73 -0.0
480,867 + Ga0059261_0487 0.73 -0.7
480,867 + Ga0059261_0487 0.73 -0.0
480,868 - Ga0059261_0487 0.73 +0.1
480,868 - Ga0059261_0487 0.73 -1.6
480,868 - Ga0059261_0487 0.73 -0.6
480,868 - Ga0059261_0487 0.73 +0.2
480,868 - Ga0059261_0487 0.73 +0.6
480,868 - Ga0059261_0487 0.73 -0.1
480,868 - Ga0059261_0487 0.73 -0.0
480,868 - Ga0059261_0487 0.73 -0.6
480,943 - Ga0059261_0487 0.83 +1.1
481,048 + -0.5
481,048 + +0.0
481,049 - +0.2
481,049 - -1.0
481,080 - +0.6
481,080 - -0.5
481,080 - +0.3
481,274 + Ga0059261_0488 0.26 +0.2
481,274 + Ga0059261_0488 0.26 +0.1
481,274 + Ga0059261_0488 0.26 -0.2
481,274 + Ga0059261_0488 0.26 -1.5
481,275 - Ga0059261_0488 0.27 +1.3
481,275 - Ga0059261_0488 0.27 -0.0
481,378 + Ga0059261_0488 0.54 -0.6
481,379 - Ga0059261_0488 0.54 +0.4
481,397 + Ga0059261_0488 0.59 -3.6
481,397 + Ga0059261_0488 0.59 -1.8
481,397 + Ga0059261_0488 0.59 +0.6
481,397 + Ga0059261_0488 0.59 +1.0
481,398 - Ga0059261_0488 0.59 +0.1
481,532 + -0.5
481,532 + -0.5
481,532 + -1.0
481,532 + +0.3
481,532 + -3.1
481,533 - +0.2
481,533 - -0.5
481,533 - +0.6
481,533 - +0.2
481,533 - +0.6
481,550 - -1.1
481,550 - +2.2
481,550 - -3.6
481,644 + Ga0059261_0489 0.18 +1.2
481,644 + Ga0059261_0489 0.18 +1.4
481,644 + Ga0059261_0489 0.18 +0.0
481,644 + Ga0059261_0489 0.18 +1.8
481,644 + Ga0059261_0489 0.18 -0.2
481,645 - Ga0059261_0489 0.18 -0.7
481,645 - Ga0059261_0489 0.18 +1.0
481,645 - Ga0059261_0489 0.18 -0.4
481,645 - Ga0059261_0489 0.18 +0.9
481,645 - Ga0059261_0489 0.18 -3.5
481,645 - Ga0059261_0489 0.18 +0.2
481,645 - Ga0059261_0489 0.18 -0.7
481,645 - Ga0059261_0489 0.18 -0.3
481,645 - Ga0059261_0489 0.18 -0.4
481,645 - Ga0059261_0489 0.18 +1.2
481,645 - Ga0059261_0489 0.18 +0.1
481,645 - Ga0059261_0489 0.18 -3.1
481,645 - Ga0059261_0489 0.18 -0.1
481,645 - Ga0059261_0489 0.18 +0.9
481,652 + Ga0059261_0489 0.19 +1.8
481,652 + Ga0059261_0489 0.19 -0.0
481,652 + Ga0059261_0489 0.19 +0.2
481,652 + Ga0059261_0489 0.19 +0.1
481,653 - Ga0059261_0489 0.20 +0.6
481,653 - Ga0059261_0489 0.20 -3.4
481,653 - Ga0059261_0489 0.20 -0.5
481,653 - Ga0059261_0489 0.20 -0.1
481,653 - Ga0059261_0489 0.20 +0.4
481,653 - Ga0059261_0489 0.20 +0.3
481,653 - Ga0059261_0489 0.20 +2.1
481,653 - Ga0059261_0489 0.20 -0.2
481,653 - Ga0059261_0489 0.20 +0.3
481,674 - Ga0059261_0489 0.24 +1.5
481,733 + Ga0059261_0489 0.38 +1.7
481,734 - Ga0059261_0489 0.38 +0.4
481,734 - Ga0059261_0489 0.38 +0.1
481,734 - Ga0059261_0489 0.38 +0.4
481,859 - Ga0059261_0489 0.66 -0.4
481,944 - Ga0059261_0489 0.85 -2.8
481,944 - +1.4
481,944 - Ga0059261_0489 0.85 -0.4
481,944 - Ga0059261_0489 0.85 +1.0
481,944 - Ga0059261_0489 0.85 -1.0
482,014 + +0.9
482,015 - -0.0

Or see this region's nucleotide sequence