Experiment: D-Cellobiose (C); no added vitamins
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0476 and Ga0059261_0477 are separated by 106 nucleotides Ga0059261_0477 and Ga0059261_0478 overlap by 4 nucleotides Ga0059261_0478 and Ga0059261_0479 are separated by 122 nucleotides
Ga0059261_0476: Ga0059261_0476 - hypothetical protein, at 463,769 to 463,900
_0476
Ga0059261_0477: Ga0059261_0477 - RNA polymerase sigma factor, sigma-70 family, at 464,007 to 464,513
_0477
Ga0059261_0478: Ga0059261_0478 - FecR family protein, at 464,510 to 465,466
_0478
Ga0059261_0479: Ga0059261_0479 - TonB-dependent receptor, at 465,589 to 468,783
_0479
Position (kb) 464
465
466 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 463.543 kb on + strand at 463.543 kb on + strand at 463.543 kb on + strand at 463.543 kb on + strand at 463.543 kb on + strand at 463.543 kb on + strand at 463.543 kb on + strand at 463.543 kb on + strand at 463.544 kb on - strand at 463.544 kb on - strand at 463.544 kb on - strand at 463.544 kb on - strand at 463.544 kb on - strand at 463.544 kb on - strand at 463.546 kb on + strand at 463.547 kb on - strand at 463.547 kb on - strand at 463.547 kb on - strand at 463.547 kb on - strand at 463.547 kb on - strand at 463.588 kb on + strand at 463.589 kb on - strand at 463.606 kb on + strand at 463.606 kb on + strand at 463.607 kb on - strand at 463.614 kb on + strand at 463.614 kb on + strand at 463.615 kb on - strand at 463.636 kb on + strand at 463.768 kb on + strand at 463.768 kb on + strand at 463.769 kb on - strand at 463.769 kb on - strand at 463.777 kb on + strand at 463.777 kb on + strand at 463.777 kb on + strand at 463.777 kb on + strand at 463.778 kb on - strand at 463.778 kb on - strand at 463.778 kb on - strand at 463.778 kb on - strand at 463.778 kb on - strand at 463.778 kb on - strand at 463.898 kb on + strand at 463.898 kb on + strand at 463.898 kb on + strand at 463.911 kb on + strand at 463.930 kb on + strand at 463.930 kb on + strand at 463.965 kb on + strand at 463.965 kb on + strand at 463.965 kb on + strand at 463.965 kb on + strand at 463.965 kb on + strand at 463.965 kb on + strand at 463.965 kb on + strand at 463.965 kb on + strand at 463.965 kb on + strand at 463.966 kb on - strand at 463.966 kb on - strand at 463.966 kb on - strand at 463.966 kb on - strand at 463.966 kb on - strand at 463.966 kb on - strand at 464.061 kb on + strand, within Ga0059261_0477 at 464.061 kb on + strand, within Ga0059261_0477 at 464.061 kb on + strand, within Ga0059261_0477 at 464.061 kb on + strand, within Ga0059261_0477 at 464.062 kb on - strand, within Ga0059261_0477 at 464.102 kb on + strand, within Ga0059261_0477 at 464.102 kb on + strand, within Ga0059261_0477 at 464.102 kb on + strand, within Ga0059261_0477 at 464.103 kb on - strand, within Ga0059261_0477 at 464.207 kb on + strand, within Ga0059261_0477 at 464.207 kb on + strand, within Ga0059261_0477 at 464.207 kb on + strand, within Ga0059261_0477 at 464.211 kb on + strand, within Ga0059261_0477 at 464.211 kb on + strand, within Ga0059261_0477 at 464.211 kb on + strand, within Ga0059261_0477 at 464.211 kb on + strand, within Ga0059261_0477 at 464.211 kb on + strand, within Ga0059261_0477 at 464.211 kb on + strand, within Ga0059261_0477 at 464.212 kb on - strand, within Ga0059261_0477 at 464.212 kb on - strand, within Ga0059261_0477 at 464.212 kb on - strand, within Ga0059261_0477 at 464.212 kb on - strand, within Ga0059261_0477 at 464.212 kb on - strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.442 kb on - strand, within Ga0059261_0477 at 464.442 kb on - strand, within Ga0059261_0477 at 464.442 kb on - strand, within Ga0059261_0477 at 464.444 kb on + strand, within Ga0059261_0477 at 464.445 kb on - strand, within Ga0059261_0477 at 464.445 kb on - strand, within Ga0059261_0477 at 464.445 kb on - strand, within Ga0059261_0477 at 464.445 kb on - strand, within Ga0059261_0477 at 464.506 kb on + strand at 464.506 kb on + strand at 464.506 kb on + strand at 464.506 kb on + strand at 464.506 kb on + strand at 464.506 kb on + strand at 464.506 kb on + strand at 464.507 kb on - strand at 464.507 kb on - strand at 464.507 kb on - strand at 464.507 kb on - strand at 464.507 kb on - strand at 464.559 kb on + strand at 464.559 kb on + strand at 464.559 kb on + strand at 464.566 kb on + strand at 464.566 kb on + strand at 464.567 kb on - strand at 464.648 kb on + strand, within Ga0059261_0478 at 464.648 kb on + strand, within Ga0059261_0478 at 464.648 kb on + strand, within Ga0059261_0478 at 464.648 kb on + strand, within Ga0059261_0478 at 464.648 kb on + strand, within Ga0059261_0478 at 464.648 kb on + strand, within Ga0059261_0478 at 464.648 kb on + strand, within Ga0059261_0478 at 464.648 kb on + strand, within Ga0059261_0478 at 464.649 kb on - strand, within Ga0059261_0478 at 464.649 kb on - strand, within Ga0059261_0478 at 464.649 kb on - strand, within Ga0059261_0478 at 464.649 kb on - strand, within Ga0059261_0478 at 464.649 kb on - strand, within Ga0059261_0478 at 464.667 kb on + strand, within Ga0059261_0478 at 464.668 kb on - strand, within Ga0059261_0478 at 464.668 kb on - strand, within Ga0059261_0478 at 464.668 kb on - strand, within Ga0059261_0478 at 464.668 kb on - strand, within Ga0059261_0478 at 464.668 kb on - strand, within Ga0059261_0478 at 464.814 kb on + strand, within Ga0059261_0478 at 464.814 kb on + strand, within Ga0059261_0478 at 464.815 kb on - strand, within Ga0059261_0478 at 464.815 kb on - strand, within Ga0059261_0478 at 464.815 kb on - strand, within Ga0059261_0478 at 464.815 kb on - strand, within Ga0059261_0478 at 464.855 kb on + strand, within Ga0059261_0478 at 464.856 kb on - strand, within Ga0059261_0478 at 465.015 kb on + strand, within Ga0059261_0478 at 465.015 kb on + strand, within Ga0059261_0478 at 465.015 kb on + strand, within Ga0059261_0478 at 465.015 kb on + strand, within Ga0059261_0478 at 465.016 kb on - strand at 465.016 kb on - strand, within Ga0059261_0478 at 465.016 kb on - strand, within Ga0059261_0478 at 465.016 kb on - strand, within Ga0059261_0478 at 465.114 kb on - strand, within Ga0059261_0478 at 465.316 kb on - strand, within Ga0059261_0478 at 465.454 kb on - strand at 465.516 kb on - strand at 465.573 kb on + strand at 465.573 kb on + strand at 465.573 kb on + strand at 466.021 kb on + strand, within Ga0059261_0479 at 466.021 kb on + strand, within Ga0059261_0479 at 466.022 kb on - strand, within Ga0059261_0479 at 466.022 kb on - strand, within Ga0059261_0479 at 466.231 kb on + strand at 466.231 kb on + strand, within Ga0059261_0479 at 466.231 kb on + strand, within Ga0059261_0479 at 466.231 kb on + strand, within Ga0059261_0479 at 466.231 kb on + strand, within Ga0059261_0479 at 466.231 kb on + strand, within Ga0059261_0479 at 466.231 kb on + strand, within Ga0059261_0479 at 466.231 kb on + strand, within Ga0059261_0479 at 466.232 kb on - strand, within Ga0059261_0479 at 466.232 kb on - strand, within Ga0059261_0479 at 466.232 kb on - strand, within Ga0059261_0479 at 466.232 kb on - strand, within Ga0059261_0479 at 466.285 kb on + strand, within Ga0059261_0479 at 466.285 kb on + strand, within Ga0059261_0479 at 466.285 kb on + strand, within Ga0059261_0479 at 466.285 kb on + strand, within Ga0059261_0479 at 466.286 kb on - strand, within Ga0059261_0479 at 466.286 kb on - strand, within Ga0059261_0479 at 466.286 kb on - strand, within Ga0059261_0479 at 466.286 kb on - strand, within Ga0059261_0479 at 466.295 kb on + strand, within Ga0059261_0479 at 466.296 kb on - strand, within Ga0059261_0479 at 466.395 kb on + strand, within Ga0059261_0479 at 466.395 kb on + strand, within Ga0059261_0479 at 466.396 kb on - strand, within Ga0059261_0479 at 466.396 kb on - strand, within Ga0059261_0479 at 466.396 kb on - strand, within Ga0059261_0479 at 466.432 kb on + strand, within Ga0059261_0479 at 466.432 kb on + strand at 466.433 kb on - strand, within Ga0059261_0479 at 466.433 kb on - strand, within Ga0059261_0479 at 466.433 kb on - strand, within Ga0059261_0479 at 466.433 kb on - strand, within Ga0059261_0479 at 466.433 kb on - strand, within Ga0059261_0479
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C); no added vitamins remove 463,543 + -0.0 463,543 + +0.0 463,543 + -0.7 463,543 + -0.4 463,543 + +0.1 463,543 + -4.0 463,543 + +0.4 463,543 + -2.1 463,544 - -0.2 463,544 - -2.3 463,544 - +0.1 463,544 - -1.3 463,544 - +0.7 463,544 - -0.7 463,546 + +0.0 463,547 - -0.8 463,547 - +0.1 463,547 - +0.6 463,547 - -0.0 463,547 - -0.2 463,588 + -0.4 463,589 - -3.5 463,606 + +1.3 463,606 + -3.4 463,607 - -0.4 463,614 + +0.9 463,614 + -0.7 463,615 - +1.5 463,636 + -0.5 463,768 + +0.3 463,768 + +0.1 463,769 - +1.0 463,769 - -0.4 463,777 + -0.1 463,777 + -0.1 463,777 + +0.1 463,777 + +0.2 463,778 - +0.9 463,778 - +0.5 463,778 - +1.0 463,778 - +0.2 463,778 - -1.3 463,778 - +0.2 463,898 + +1.8 463,898 + +0.0 463,898 + +1.5 463,911 + +1.2 463,930 + +0.3 463,930 + -0.6 463,965 + -2.2 463,965 + +0.8 463,965 + +0.9 463,965 + -0.3 463,965 + -2.4 463,965 + +0.3 463,965 + -0.0 463,965 + -0.4 463,965 + -0.7 463,966 - +0.7 463,966 - -0.7 463,966 - +0.1 463,966 - -3.1 463,966 - -0.6 463,966 - +0.1 464,061 + Ga0059261_0477 0.11 -1.6 464,061 + Ga0059261_0477 0.11 -0.5 464,061 + Ga0059261_0477 0.11 +0.1 464,061 + Ga0059261_0477 0.11 +0.6 464,062 - Ga0059261_0477 0.11 -0.8 464,102 + Ga0059261_0477 0.19 +0.9 464,102 + Ga0059261_0477 0.19 +0.7 464,102 + Ga0059261_0477 0.19 -0.7 464,103 - Ga0059261_0477 0.19 +0.5 464,207 + Ga0059261_0477 0.39 +0.0 464,207 + Ga0059261_0477 0.39 +1.0 464,207 + Ga0059261_0477 0.39 +1.6 464,211 + Ga0059261_0477 0.40 -0.3 464,211 + Ga0059261_0477 0.40 +0.4 464,211 + Ga0059261_0477 0.40 +0.3 464,211 + Ga0059261_0477 0.40 -0.2 464,211 + Ga0059261_0477 0.40 +0.0 464,211 + Ga0059261_0477 0.40 +0.6 464,212 - Ga0059261_0477 0.40 -0.1 464,212 - Ga0059261_0477 0.40 +0.7 464,212 - Ga0059261_0477 0.40 -2.5 464,212 - Ga0059261_0477 0.40 +0.9 464,212 - Ga0059261_0477 0.40 +0.2 464,441 + Ga0059261_0477 0.86 +0.8 464,441 + Ga0059261_0477 0.86 +0.7 464,441 + Ga0059261_0477 0.86 -0.1 464,441 + Ga0059261_0477 0.86 -1.5 464,441 + Ga0059261_0477 0.86 -0.5 464,441 + Ga0059261_0477 0.86 -0.8 464,441 + Ga0059261_0477 0.86 +0.5 464,441 + Ga0059261_0477 0.86 -1.7 464,441 + Ga0059261_0477 0.86 -1.1 464,442 - Ga0059261_0477 0.86 -0.1 464,442 - Ga0059261_0477 0.86 -0.8 464,442 - Ga0059261_0477 0.86 +1.5 464,444 + Ga0059261_0477 0.86 +0.0 464,445 - Ga0059261_0477 0.86 +0.6 464,445 - Ga0059261_0477 0.86 +0.1 464,445 - Ga0059261_0477 0.86 +0.4 464,445 - Ga0059261_0477 0.86 -0.3 464,506 + -0.5 464,506 + -0.0 464,506 + +0.3 464,506 + +0.0 464,506 + -0.0 464,506 + -0.9 464,506 + -0.3 464,507 - +0.1 464,507 - -0.5 464,507 - +0.1 464,507 - -1.8 464,507 - +0.4 464,559 + -0.2 464,559 + -0.3 464,559 + +1.2 464,566 + +0.5 464,566 + +1.7 464,567 - -1.2 464,648 + Ga0059261_0478 0.14 -0.2 464,648 + Ga0059261_0478 0.14 -0.1 464,648 + Ga0059261_0478 0.14 +0.2 464,648 + Ga0059261_0478 0.14 +0.8 464,648 + Ga0059261_0478 0.14 +0.5 464,648 + Ga0059261_0478 0.14 +0.5 464,648 + Ga0059261_0478 0.14 -0.4 464,648 + Ga0059261_0478 0.14 +1.0 464,649 - Ga0059261_0478 0.15 +1.3 464,649 - Ga0059261_0478 0.15 +0.5 464,649 - Ga0059261_0478 0.15 +1.2 464,649 - Ga0059261_0478 0.15 +0.0 464,649 - Ga0059261_0478 0.15 -1.6 464,667 + Ga0059261_0478 0.16 -0.6 464,668 - Ga0059261_0478 0.17 -1.1 464,668 - Ga0059261_0478 0.17 -0.2 464,668 - Ga0059261_0478 0.17 +0.9 464,668 - Ga0059261_0478 0.17 -1.1 464,668 - Ga0059261_0478 0.17 +0.2 464,814 + Ga0059261_0478 0.32 -0.5 464,814 + Ga0059261_0478 0.32 +0.4 464,815 - Ga0059261_0478 0.32 -1.3 464,815 - Ga0059261_0478 0.32 +0.8 464,815 - Ga0059261_0478 0.32 +0.0 464,815 - Ga0059261_0478 0.32 +0.6 464,855 + Ga0059261_0478 0.36 -0.7 464,856 - Ga0059261_0478 0.36 -0.5 465,015 + Ga0059261_0478 0.53 +0.7 465,015 + Ga0059261_0478 0.53 +0.6 465,015 + Ga0059261_0478 0.53 +0.1 465,015 + Ga0059261_0478 0.53 +0.3 465,016 - +2.8 465,016 - Ga0059261_0478 0.53 +0.3 465,016 - Ga0059261_0478 0.53 +1.4 465,016 - Ga0059261_0478 0.53 +0.9 465,114 - Ga0059261_0478 0.63 +0.6 465,316 - Ga0059261_0478 0.84 +1.6 465,454 - +3.5 465,516 - +0.1 465,573 + +0.7 465,573 + -3.1 465,573 + +0.0 466,021 + Ga0059261_0479 0.14 -0.3 466,021 + Ga0059261_0479 0.14 +0.0 466,022 - Ga0059261_0479 0.14 +0.1 466,022 - Ga0059261_0479 0.14 +1.7 466,231 + +0.6 466,231 + Ga0059261_0479 0.20 -1.6 466,231 + Ga0059261_0479 0.20 -0.7 466,231 + Ga0059261_0479 0.20 -1.4 466,231 + Ga0059261_0479 0.20 +1.3 466,231 + Ga0059261_0479 0.20 +1.7 466,231 + Ga0059261_0479 0.20 +1.0 466,231 + Ga0059261_0479 0.20 +0.2 466,232 - Ga0059261_0479 0.20 +1.0 466,232 - Ga0059261_0479 0.20 +0.1 466,232 - Ga0059261_0479 0.20 +0.4 466,232 - Ga0059261_0479 0.20 -1.1 466,285 + Ga0059261_0479 0.22 +0.5 466,285 + Ga0059261_0479 0.22 -0.6 466,285 + Ga0059261_0479 0.22 +0.2 466,285 + Ga0059261_0479 0.22 -0.5 466,286 - Ga0059261_0479 0.22 +0.3 466,286 - Ga0059261_0479 0.22 +0.3 466,286 - Ga0059261_0479 0.22 -2.5 466,286 - Ga0059261_0479 0.22 +1.8 466,295 + Ga0059261_0479 0.22 +1.6 466,296 - Ga0059261_0479 0.22 -1.2 466,395 + Ga0059261_0479 0.25 +0.9 466,395 + Ga0059261_0479 0.25 +0.6 466,396 - Ga0059261_0479 0.25 -2.4 466,396 - Ga0059261_0479 0.25 +0.6 466,396 - Ga0059261_0479 0.25 +0.6 466,432 + Ga0059261_0479 0.26 -1.0 466,432 + +1.3 466,433 - Ga0059261_0479 0.26 -1.6 466,433 - Ga0059261_0479 0.26 -1.5 466,433 - Ga0059261_0479 0.26 +0.4 466,433 - Ga0059261_0479 0.26 +0.4 466,433 - Ga0059261_0479 0.26 +0.2
Or see this region's nucleotide sequence