Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0361

Experiment: D-Cellobiose (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0359 and Ga0059261_0360 are separated by 103 nucleotidesGa0059261_0360 and Ga0059261_0361 are separated by 27 nucleotidesGa0059261_0361 and Ga0059261_0362 are separated by 22 nucleotides Ga0059261_0359: Ga0059261_0359 - transcriptional regulator, HxlR family, at 346,848 to 347,210 _0359 Ga0059261_0360: Ga0059261_0360 - Putative NADH-flavin reductase, at 347,314 to 347,922 _0360 Ga0059261_0361: Ga0059261_0361 - conserved hypothetical protein, YceG family, at 347,950 to 348,921 _0361 Ga0059261_0362: Ga0059261_0362 - beta-ketoacyl-acyl-carrier-protein synthase II, at 348,944 to 350,203 _0362 Position (kb) 347 348 349Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 346.969 kb on + strand, within Ga0059261_0359at 346.969 kb on + strand, within Ga0059261_0359at 346.969 kb on + strand, within Ga0059261_0359at 346.969 kb on + strand, within Ga0059261_0359at 346.969 kb on + strand, within Ga0059261_0359at 347.191 kb on + strandat 347.191 kb on + strandat 347.191 kb on + strandat 347.191 kb on + strandat 347.191 kb on + strandat 347.191 kb on + strandat 347.192 kb on - strandat 347.192 kb on - strandat 347.192 kb on - strandat 347.192 kb on - strandat 347.192 kb on - strandat 347.192 kb on - strandat 347.192 kb on - strandat 347.192 kb on - strandat 347.192 kb on - strandat 347.231 kb on + strandat 347.231 kb on + strandat 347.231 kb on + strandat 347.231 kb on + strandat 347.232 kb on - strandat 347.232 kb on - strandat 347.232 kb on - strandat 347.232 kb on - strandat 347.232 kb on - strandat 347.232 kb on - strandat 347.737 kb on + strand, within Ga0059261_0360at 347.737 kb on + strand, within Ga0059261_0360at 347.737 kb on + strand, within Ga0059261_0360at 347.737 kb on + strand, within Ga0059261_0360at 347.737 kb on + strand, within Ga0059261_0360at 347.737 kb on + strand, within Ga0059261_0360at 347.737 kb on + strand, within Ga0059261_0360at 347.738 kb on - strand, within Ga0059261_0360at 347.738 kb on - strand, within Ga0059261_0360at 347.738 kb on - strandat 347.738 kb on - strand, within Ga0059261_0360at 347.785 kb on + strand, within Ga0059261_0360at 347.851 kb on + strand, within Ga0059261_0360at 347.852 kb on - strandat 347.852 kb on - strand, within Ga0059261_0360at 347.852 kb on - strand, within Ga0059261_0360at 347.852 kb on - strand, within Ga0059261_0360at 347.917 kb on + strandat 347.918 kb on - strandat 347.951 kb on + strandat 347.951 kb on + strandat 347.952 kb on - strandat 347.952 kb on - strandat 347.952 kb on - strandat 347.952 kb on - strandat 347.952 kb on - strandat 347.952 kb on - strandat 347.981 kb on + strandat 347.981 kb on + strandat 347.981 kb on + strandat 347.981 kb on + strandat 347.981 kb on + strandat 347.982 kb on - strandat 347.982 kb on - strandat 347.982 kb on - strandat 348.030 kb on + strandat 348.030 kb on + strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.060 kb on - strand, within Ga0059261_0361at 348.060 kb on - strand, within Ga0059261_0361at 348.097 kb on + strand, within Ga0059261_0361at 348.097 kb on + strand, within Ga0059261_0361at 348.098 kb on - strand, within Ga0059261_0361at 348.152 kb on + strand, within Ga0059261_0361at 348.152 kb on + strand, within Ga0059261_0361at 348.152 kb on + strand, within Ga0059261_0361at 348.152 kb on + strand, within Ga0059261_0361at 348.152 kb on + strand, within Ga0059261_0361at 348.152 kb on + strand, within Ga0059261_0361at 348.152 kb on + strand, within Ga0059261_0361at 348.152 kb on + strand, within Ga0059261_0361at 348.153 kb on - strandat 348.153 kb on - strand, within Ga0059261_0361at 348.153 kb on - strand, within Ga0059261_0361at 348.153 kb on - strand, within Ga0059261_0361at 348.153 kb on - strand, within Ga0059261_0361at 348.153 kb on - strand, within Ga0059261_0361at 348.153 kb on - strand, within Ga0059261_0361at 348.153 kb on - strand, within Ga0059261_0361at 348.153 kb on - strand, within Ga0059261_0361at 348.161 kb on + strand, within Ga0059261_0361at 348.161 kb on + strandat 348.162 kb on - strand, within Ga0059261_0361at 348.231 kb on - strand, within Ga0059261_0361at 348.231 kb on - strand, within Ga0059261_0361at 348.231 kb on - strand, within Ga0059261_0361at 348.284 kb on + strand, within Ga0059261_0361at 348.284 kb on + strand, within Ga0059261_0361at 348.284 kb on + strand, within Ga0059261_0361at 348.285 kb on - strand, within Ga0059261_0361at 348.285 kb on - strand, within Ga0059261_0361at 348.285 kb on - strand, within Ga0059261_0361at 348.417 kb on - strand, within Ga0059261_0361at 348.417 kb on - strand, within Ga0059261_0361at 348.417 kb on - strand, within Ga0059261_0361at 348.476 kb on + strand, within Ga0059261_0361at 348.476 kb on + strand, within Ga0059261_0361at 348.477 kb on - strand, within Ga0059261_0361at 348.477 kb on - strand, within Ga0059261_0361at 348.482 kb on + strand, within Ga0059261_0361at 348.482 kb on + strand, within Ga0059261_0361at 348.482 kb on + strand, within Ga0059261_0361at 348.482 kb on + strand, within Ga0059261_0361at 348.482 kb on + strand, within Ga0059261_0361at 348.482 kb on + strand, within Ga0059261_0361at 348.482 kb on + strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.639 kb on + strand, within Ga0059261_0361at 348.672 kb on - strand, within Ga0059261_0361

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); no added vitamins
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346,969 + Ga0059261_0359 0.33 -1.3
346,969 + Ga0059261_0359 0.33 -0.1
346,969 + Ga0059261_0359 0.33 +0.5
346,969 + Ga0059261_0359 0.33 -2.5
346,969 + Ga0059261_0359 0.33 +0.7
347,191 + -0.3
347,191 + +0.4
347,191 + -0.1
347,191 + -0.0
347,191 + -0.8
347,191 + +0.7
347,192 - +0.1
347,192 - +1.1
347,192 - -1.9
347,192 - +0.5
347,192 - -0.5
347,192 - +0.5
347,192 - -2.9
347,192 - +1.1
347,192 - +0.5
347,231 + -0.1
347,231 + -1.7
347,231 + -1.9
347,231 + -1.0
347,232 - +0.0
347,232 - +1.3
347,232 - -1.9
347,232 - +0.9
347,232 - -0.3
347,232 - -0.8
347,737 + Ga0059261_0360 0.69 -0.1
347,737 + Ga0059261_0360 0.69 +0.5
347,737 + Ga0059261_0360 0.69 -0.9
347,737 + Ga0059261_0360 0.69 -0.0
347,737 + Ga0059261_0360 0.69 +0.1
347,737 + Ga0059261_0360 0.69 -2.8
347,737 + Ga0059261_0360 0.69 +1.9
347,738 - Ga0059261_0360 0.70 +0.1
347,738 - Ga0059261_0360 0.70 -0.4
347,738 - +0.6
347,738 - Ga0059261_0360 0.70 -0.4
347,785 + Ga0059261_0360 0.77 -0.4
347,851 + Ga0059261_0360 0.88 +1.1
347,852 - -1.0
347,852 - Ga0059261_0360 0.88 -0.7
347,852 - Ga0059261_0360 0.88 +0.5
347,852 - Ga0059261_0360 0.88 +1.0
347,917 + -0.8
347,918 - -0.3
347,951 + -0.5
347,951 + +0.7
347,952 - -0.2
347,952 - +0.2
347,952 - -1.8
347,952 - -0.1
347,952 - -1.4
347,952 - +1.0
347,981 + -1.3
347,981 + -3.4
347,981 + -1.6
347,981 + -3.1
347,981 + -2.3
347,982 - -4.2
347,982 - -3.5
347,982 - +0.3
348,030 + -1.9
348,030 + -1.8
348,031 - -3.3
348,031 - -4.0
348,031 - -2.0
348,031 - -1.0
348,031 - -2.8
348,031 - -3.3
348,031 - -2.6
348,060 - Ga0059261_0361 0.11 -3.1
348,060 - Ga0059261_0361 0.11 -2.6
348,097 + Ga0059261_0361 0.15 -2.2
348,097 + Ga0059261_0361 0.15 -1.9
348,098 - Ga0059261_0361 0.15 -2.7
348,152 + Ga0059261_0361 0.21 -2.4
348,152 + Ga0059261_0361 0.21 -3.2
348,152 + Ga0059261_0361 0.21 -1.4
348,152 + Ga0059261_0361 0.21 -2.9
348,152 + Ga0059261_0361 0.21 -3.7
348,152 + Ga0059261_0361 0.21 -3.5
348,152 + Ga0059261_0361 0.21 -2.6
348,152 + Ga0059261_0361 0.21 -1.3
348,153 - -2.0
348,153 - Ga0059261_0361 0.21 -3.6
348,153 - Ga0059261_0361 0.21 -1.1
348,153 - Ga0059261_0361 0.21 -3.5
348,153 - Ga0059261_0361 0.21 -1.7
348,153 - Ga0059261_0361 0.21 -2.1
348,153 - Ga0059261_0361 0.21 -1.8
348,153 - Ga0059261_0361 0.21 -3.3
348,153 - Ga0059261_0361 0.21 -0.5
348,161 + Ga0059261_0361 0.22 -2.4
348,161 + -0.7
348,162 - Ga0059261_0361 0.22 -1.2
348,231 - Ga0059261_0361 0.29 -3.2
348,231 - Ga0059261_0361 0.29 -1.7
348,231 - Ga0059261_0361 0.29 -3.7
348,284 + Ga0059261_0361 0.34 -2.5
348,284 + Ga0059261_0361 0.34 -2.9
348,284 + Ga0059261_0361 0.34 -5.9
348,285 - Ga0059261_0361 0.34 -3.6
348,285 - Ga0059261_0361 0.34 -1.4
348,285 - Ga0059261_0361 0.34 -4.0
348,417 - Ga0059261_0361 0.48 -4.9
348,417 - Ga0059261_0361 0.48 -3.7
348,417 - Ga0059261_0361 0.48 -3.0
348,476 + Ga0059261_0361 0.54 -3.1
348,476 + Ga0059261_0361 0.54 -2.0
348,477 - Ga0059261_0361 0.54 -2.5
348,477 - Ga0059261_0361 0.54 -2.7
348,482 + Ga0059261_0361 0.55 -2.5
348,482 + Ga0059261_0361 0.55 -2.3
348,482 + Ga0059261_0361 0.55 -2.2
348,482 + Ga0059261_0361 0.55 +0.0
348,482 + Ga0059261_0361 0.55 -3.8
348,482 + Ga0059261_0361 0.55 -3.7
348,482 + Ga0059261_0361 0.55 -1.6
348,483 - Ga0059261_0361 0.55 +0.6
348,483 - Ga0059261_0361 0.55 -2.8
348,483 - Ga0059261_0361 0.55 -2.1
348,483 - Ga0059261_0361 0.55 -1.7
348,483 - Ga0059261_0361 0.55 -1.6
348,483 - Ga0059261_0361 0.55 -2.7
348,483 - Ga0059261_0361 0.55 -0.8
348,483 - Ga0059261_0361 0.55 -1.9
348,483 - Ga0059261_0361 0.55 -3.5
348,483 - Ga0059261_0361 0.55 -2.0
348,483 - Ga0059261_0361 0.55 -3.0
348,639 + Ga0059261_0361 0.71 -1.5
348,672 - Ga0059261_0361 0.74 -3.8

Or see this region's nucleotide sequence