Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0349

Experiment: D-Cellobiose (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0347 and Ga0059261_0348 are separated by 83 nucleotidesGa0059261_0348 and Ga0059261_0349 are separated by 329 nucleotidesGa0059261_0349 and Ga0059261_0350 are separated by 25 nucleotidesGa0059261_0350 and Ga0059261_0351 overlap by 4 nucleotides Ga0059261_0347: Ga0059261_0347 - CTP synthase (EC 6.3.4.2), at 335,250 to 336,887 _0347 Ga0059261_0348: Ga0059261_0348 - protein translocase, SecG subunit, at 336,971 to 337,333 _0348 Ga0059261_0349: Ga0059261_0349 - MarR family, at 337,663 to 338,022 _0349 Ga0059261_0350: Ga0059261_0350 - Bacterial SH3 domain, at 338,048 to 338,332 _0350 Ga0059261_0351: Ga0059261_0351 - N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data), at 338,329 to 339,261 _0351 Position (kb) 337 338 339Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 336.973 kb on - strandat 336.973 kb on - strandat 336.973 kb on - strandat 336.973 kb on - strandat 336.973 kb on - strandat 337.590 kb on + strandat 337.625 kb on + strandat 337.626 kb on - strandat 337.626 kb on - strandat 337.626 kb on - strandat 337.629 kb on + strandat 337.629 kb on + strandat 337.688 kb on + strandat 337.688 kb on + strandat 337.688 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.691 kb on - strandat 337.691 kb on - strandat 337.691 kb on - strandat 337.691 kb on - strandat 337.692 kb on + strandat 337.692 kb on + strandat 337.692 kb on + strandat 337.692 kb on + strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.704 kb on + strand, within Ga0059261_0349at 337.704 kb on + strand, within Ga0059261_0349at 337.705 kb on - strand, within Ga0059261_0349at 337.717 kb on + strand, within Ga0059261_0349at 337.717 kb on + strand, within Ga0059261_0349at 337.717 kb on + strand, within Ga0059261_0349at 337.777 kb on + strand, within Ga0059261_0349at 337.778 kb on - strand, within Ga0059261_0349at 337.778 kb on - strand, within Ga0059261_0349at 337.860 kb on + strand, within Ga0059261_0349at 337.861 kb on - strand, within Ga0059261_0349at 337.861 kb on - strand, within Ga0059261_0349at 337.880 kb on - strand, within Ga0059261_0349at 337.932 kb on + strand, within Ga0059261_0349at 337.932 kb on + strand, within Ga0059261_0349at 337.933 kb on - strand, within Ga0059261_0349at 337.933 kb on - strand, within Ga0059261_0349at 337.933 kb on - strand, within Ga0059261_0349at 338.021 kb on - strandat 338.129 kb on + strand, within Ga0059261_0350at 338.129 kb on + strand, within Ga0059261_0350at 338.129 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strandat 338.148 kb on - strand, within Ga0059261_0350at 338.148 kb on - strand, within Ga0059261_0350at 338.148 kb on - strand, within Ga0059261_0350at 338.148 kb on - strand, within Ga0059261_0350at 338.297 kb on + strand, within Ga0059261_0350at 338.298 kb on - strand, within Ga0059261_0350at 338.602 kb on + strand, within Ga0059261_0351at 338.602 kb on + strand, within Ga0059261_0351at 338.602 kb on + strand, within Ga0059261_0351at 338.603 kb on - strand, within Ga0059261_0351at 338.603 kb on - strand, within Ga0059261_0351at 338.603 kb on - strand, within Ga0059261_0351at 338.603 kb on - strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.657 kb on - strand, within Ga0059261_0351at 338.657 kb on - strand, within Ga0059261_0351at 338.657 kb on - strand, within Ga0059261_0351at 338.657 kb on - strand, within Ga0059261_0351at 338.839 kb on + strand, within Ga0059261_0351at 338.839 kb on + strand, within Ga0059261_0351at 338.839 kb on + strand, within Ga0059261_0351at 338.840 kb on - strand, within Ga0059261_0351at 338.935 kb on + strand, within Ga0059261_0351

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); no added vitamins
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336,973 - +1.1
336,973 - -1.3
336,973 - -1.6
336,973 - -1.1
336,973 - -0.3
337,590 + -1.8
337,625 + -1.3
337,626 - -4.3
337,626 - -3.2
337,626 - -1.4
337,629 + -0.4
337,629 + -0.2
337,688 + -1.5
337,688 + -4.4
337,688 + -1.7
337,690 + -3.9
337,690 + -4.0
337,690 + -2.8
337,690 + -1.8
337,690 + -2.8
337,690 + -2.3
337,690 + -3.3
337,690 + -3.5
337,690 + -2.0
337,691 - -2.7
337,691 - -2.0
337,691 - -4.6
337,691 - -1.7
337,692 + -1.3
337,692 + -2.6
337,692 + -5.1
337,692 + -3.8
337,693 - -1.7
337,693 - -3.1
337,693 - -1.4
337,693 - -3.1
337,693 - -2.1
337,693 - -0.5
337,693 - -3.0
337,704 + Ga0059261_0349 0.11 -3.0
337,704 + Ga0059261_0349 0.11 -2.5
337,705 - Ga0059261_0349 0.12 -2.9
337,717 + Ga0059261_0349 0.15 -3.1
337,717 + Ga0059261_0349 0.15 -4.1
337,717 + Ga0059261_0349 0.15 -3.7
337,777 + Ga0059261_0349 0.32 -3.4
337,778 - Ga0059261_0349 0.32 -3.2
337,778 - Ga0059261_0349 0.32 -1.6
337,860 + Ga0059261_0349 0.55 -3.8
337,861 - Ga0059261_0349 0.55 -1.4
337,861 - Ga0059261_0349 0.55 -3.0
337,880 - Ga0059261_0349 0.60 -1.7
337,932 + Ga0059261_0349 0.75 -0.5
337,932 + Ga0059261_0349 0.75 -0.6
337,933 - Ga0059261_0349 0.75 -3.5
337,933 - Ga0059261_0349 0.75 -4.3
337,933 - Ga0059261_0349 0.75 -3.5
338,021 - -2.2
338,129 + Ga0059261_0350 0.28 -2.1
338,129 + Ga0059261_0350 0.28 -2.6
338,129 + Ga0059261_0350 0.28 -2.8
338,147 + Ga0059261_0350 0.35 -3.8
338,147 + Ga0059261_0350 0.35 -2.9
338,147 + Ga0059261_0350 0.35 -0.3
338,147 + Ga0059261_0350 0.35 -2.6
338,147 + Ga0059261_0350 0.35 -3.4
338,147 + Ga0059261_0350 0.35 -2.9
338,147 + Ga0059261_0350 0.35 -1.6
338,147 + Ga0059261_0350 0.35 -2.7
338,147 + Ga0059261_0350 0.35 -1.8
338,147 + -0.9
338,148 - Ga0059261_0350 0.35 -5.0
338,148 - Ga0059261_0350 0.35 -5.2
338,148 - Ga0059261_0350 0.35 -2.1
338,148 - Ga0059261_0350 0.35 -4.2
338,297 + Ga0059261_0350 0.87 -2.0
338,298 - Ga0059261_0350 0.88 -4.8
338,602 + Ga0059261_0351 0.29 -4.4
338,602 + Ga0059261_0351 0.29 -2.9
338,602 + Ga0059261_0351 0.29 -4.1
338,603 - Ga0059261_0351 0.29 -2.3
338,603 - Ga0059261_0351 0.29 -3.9
338,603 - Ga0059261_0351 0.29 -4.7
338,603 - Ga0059261_0351 0.29 -3.6
338,656 + Ga0059261_0351 0.35 -4.6
338,656 + Ga0059261_0351 0.35 -5.6
338,656 + Ga0059261_0351 0.35 -1.8
338,656 + Ga0059261_0351 0.35 -3.4
338,656 + Ga0059261_0351 0.35 -4.4
338,656 + Ga0059261_0351 0.35 -5.2
338,656 + Ga0059261_0351 0.35 -3.3
338,656 + Ga0059261_0351 0.35 -2.5
338,657 - Ga0059261_0351 0.35 -3.7
338,657 - Ga0059261_0351 0.35 -3.1
338,657 - Ga0059261_0351 0.35 -5.2
338,657 - Ga0059261_0351 0.35 -3.6
338,839 + Ga0059261_0351 0.55 -3.0
338,839 + Ga0059261_0351 0.55 -3.5
338,839 + Ga0059261_0351 0.55 -2.2
338,840 - Ga0059261_0351 0.55 -5.9
338,935 + Ga0059261_0351 0.65 -3.1

Or see this region's nucleotide sequence