Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0260

Experiment: D-Cellobiose (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0258 and Ga0059261_0259 are separated by 4 nucleotidesGa0059261_0259 and Ga0059261_0260 overlap by 4 nucleotidesGa0059261_0260 and Ga0059261_0261 overlap by 1 nucleotides Ga0059261_0258: Ga0059261_0258 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 248,436 to 250,019 _0258 Ga0059261_0259: Ga0059261_0259 - Uncharacterized conserved protein, at 250,024 to 250,560 _0259 Ga0059261_0260: Ga0059261_0260 - hypothetical protein, at 250,557 to 251,138 _0260 Ga0059261_0261: Ga0059261_0261 - hypothetical protein, at 251,138 to 252,217 _0261 Position (kb) 250 251 252Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 249.813 kb on + strand, within Ga0059261_0258at 249.814 kb on - strandat 250.098 kb on + strand, within Ga0059261_0259at 250.098 kb on + strand, within Ga0059261_0259at 250.098 kb on + strand, within Ga0059261_0259at 250.099 kb on - strand, within Ga0059261_0259at 250.099 kb on - strandat 250.099 kb on - strand, within Ga0059261_0259at 250.099 kb on - strand, within Ga0059261_0259at 250.099 kb on - strand, within Ga0059261_0259at 250.103 kb on + strand, within Ga0059261_0259at 250.103 kb on + strand, within Ga0059261_0259at 250.103 kb on + strand, within Ga0059261_0259at 250.104 kb on - strand, within Ga0059261_0259at 250.104 kb on - strand, within Ga0059261_0259at 250.104 kb on - strand, within Ga0059261_0259at 250.104 kb on - strand, within Ga0059261_0259at 250.104 kb on - strand, within Ga0059261_0259at 250.229 kb on + strand, within Ga0059261_0259at 250.229 kb on + strand, within Ga0059261_0259at 250.229 kb on + strand, within Ga0059261_0259at 250.229 kb on + strand, within Ga0059261_0259at 250.229 kb on + strand, within Ga0059261_0259at 250.229 kb on + strand, within Ga0059261_0259at 250.230 kb on - strand, within Ga0059261_0259at 250.230 kb on - strand, within Ga0059261_0259at 250.306 kb on - strand, within Ga0059261_0259at 250.379 kb on + strand, within Ga0059261_0259at 250.474 kb on + strand, within Ga0059261_0259at 250.474 kb on + strand, within Ga0059261_0259at 250.475 kb on - strand, within Ga0059261_0259at 250.475 kb on - strand, within Ga0059261_0259at 250.475 kb on - strand, within Ga0059261_0259at 250.475 kb on - strand, within Ga0059261_0259at 250.533 kb on + strandat 250.533 kb on + strandat 250.533 kb on + strandat 250.534 kb on - strandat 250.534 kb on - strandat 250.534 kb on - strandat 250.534 kb on - strandat 250.582 kb on + strandat 250.582 kb on + strandat 250.582 kb on + strandat 250.583 kb on - strandat 250.583 kb on - strandat 250.583 kb on - strandat 250.583 kb on - strandat 250.754 kb on - strand, within Ga0059261_0260at 250.754 kb on - strand, within Ga0059261_0260at 250.754 kb on - strand, within Ga0059261_0260at 250.795 kb on + strand, within Ga0059261_0260at 250.795 kb on + strand, within Ga0059261_0260at 250.795 kb on + strand, within Ga0059261_0260at 250.795 kb on + strand, within Ga0059261_0260at 250.796 kb on - strand, within Ga0059261_0260at 250.796 kb on - strand, within Ga0059261_0260at 250.796 kb on - strand, within Ga0059261_0260at 250.796 kb on - strand, within Ga0059261_0260at 250.796 kb on - strand, within Ga0059261_0260at 250.796 kb on - strand, within Ga0059261_0260at 250.796 kb on - strand, within Ga0059261_0260at 250.849 kb on + strand, within Ga0059261_0260at 250.849 kb on + strandat 250.850 kb on - strand, within Ga0059261_0260at 250.850 kb on - strand, within Ga0059261_0260at 250.974 kb on + strand, within Ga0059261_0260at 250.974 kb on + strand, within Ga0059261_0260at 251.012 kb on - strand, within Ga0059261_0260at 251.012 kb on - strand, within Ga0059261_0260at 251.046 kb on + strand, within Ga0059261_0260at 251.046 kb on + strand, within Ga0059261_0260at 251.047 kb on - strand, within Ga0059261_0260at 251.047 kb on - strand, within Ga0059261_0260at 251.182 kb on + strandat 251.295 kb on + strand, within Ga0059261_0261at 251.295 kb on + strand, within Ga0059261_0261at 251.295 kb on + strand, within Ga0059261_0261at 251.296 kb on - strand, within Ga0059261_0261at 251.296 kb on - strand, within Ga0059261_0261at 251.296 kb on - strand, within Ga0059261_0261at 251.464 kb on + strand, within Ga0059261_0261at 251.465 kb on - strand, within Ga0059261_0261at 251.465 kb on - strand, within Ga0059261_0261at 251.465 kb on - strand, within Ga0059261_0261at 251.789 kb on + strand, within Ga0059261_0261at 251.789 kb on + strand, within Ga0059261_0261at 251.910 kb on + strand, within Ga0059261_0261at 251.910 kb on + strand, within Ga0059261_0261at 251.910 kb on + strand, within Ga0059261_0261at 251.910 kb on + strand, within Ga0059261_0261at 251.911 kb on - strand, within Ga0059261_0261at 251.911 kb on - strand, within Ga0059261_0261at 251.911 kb on - strand, within Ga0059261_0261at 251.911 kb on - strand, within Ga0059261_0261at 251.959 kb on + strand, within Ga0059261_0261at 251.959 kb on + strand, within Ga0059261_0261at 251.959 kb on + strand, within Ga0059261_0261at 251.959 kb on + strand, within Ga0059261_0261at 251.959 kb on + strand, within Ga0059261_0261at 251.959 kb on + strand, within Ga0059261_0261at 251.959 kb on + strand, within Ga0059261_0261at 251.960 kb on - strand, within Ga0059261_0261at 251.960 kb on - strand, within Ga0059261_0261at 251.960 kb on - strand, within Ga0059261_0261at 251.960 kb on - strand, within Ga0059261_0261at 251.974 kb on + strand, within Ga0059261_0261at 251.974 kb on + strand, within Ga0059261_0261at 251.974 kb on + strand, within Ga0059261_0261at 251.975 kb on - strand, within Ga0059261_0261

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C); no added vitamins
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249,813 + Ga0059261_0258 0.87 -3.0
249,814 - -1.5
250,098 + Ga0059261_0259 0.14 +1.8
250,098 + Ga0059261_0259 0.14 +0.2
250,098 + Ga0059261_0259 0.14 +1.8
250,099 - Ga0059261_0259 0.14 +0.0
250,099 - +1.8
250,099 - Ga0059261_0259 0.14 -0.8
250,099 - Ga0059261_0259 0.14 +0.6
250,099 - Ga0059261_0259 0.14 +0.7
250,103 + Ga0059261_0259 0.15 -2.5
250,103 + Ga0059261_0259 0.15 -3.0
250,103 + Ga0059261_0259 0.15 +0.6
250,104 - Ga0059261_0259 0.15 +0.9
250,104 - Ga0059261_0259 0.15 -0.3
250,104 - Ga0059261_0259 0.15 +1.2
250,104 - Ga0059261_0259 0.15 -1.8
250,104 - Ga0059261_0259 0.15 +2.3
250,229 + Ga0059261_0259 0.38 -0.2
250,229 + Ga0059261_0259 0.38 +0.1
250,229 + Ga0059261_0259 0.38 -0.1
250,229 + Ga0059261_0259 0.38 +0.5
250,229 + Ga0059261_0259 0.38 +1.0
250,229 + Ga0059261_0259 0.38 +0.6
250,230 - Ga0059261_0259 0.38 +0.2
250,230 - Ga0059261_0259 0.38 +0.1
250,306 - Ga0059261_0259 0.53 +0.3
250,379 + Ga0059261_0259 0.66 -0.4
250,474 + Ga0059261_0259 0.84 +1.4
250,474 + Ga0059261_0259 0.84 +0.7
250,475 - Ga0059261_0259 0.84 +0.6
250,475 - Ga0059261_0259 0.84 -2.9
250,475 - Ga0059261_0259 0.84 +0.1
250,475 - Ga0059261_0259 0.84 +0.2
250,533 + +0.7
250,533 + +0.3
250,533 + -0.4
250,534 - +1.4
250,534 - +0.4
250,534 - -0.7
250,534 - -0.6
250,582 + +0.1
250,582 + +0.1
250,582 + -0.3
250,583 - +1.4
250,583 - +1.4
250,583 - -0.6
250,583 - -0.8
250,754 - Ga0059261_0260 0.34 +0.3
250,754 - Ga0059261_0260 0.34 -0.4
250,754 - Ga0059261_0260 0.34 +1.2
250,795 + Ga0059261_0260 0.41 -2.1
250,795 + Ga0059261_0260 0.41 +0.3
250,795 + Ga0059261_0260 0.41 -1.4
250,795 + Ga0059261_0260 0.41 +0.3
250,796 - Ga0059261_0260 0.41 -0.2
250,796 - Ga0059261_0260 0.41 -0.2
250,796 - Ga0059261_0260 0.41 -0.8
250,796 - Ga0059261_0260 0.41 -0.7
250,796 - Ga0059261_0260 0.41 +0.6
250,796 - Ga0059261_0260 0.41 +0.4
250,796 - Ga0059261_0260 0.41 +1.0
250,849 + Ga0059261_0260 0.50 +1.0
250,849 + +1.6
250,850 - Ga0059261_0260 0.50 +0.3
250,850 - Ga0059261_0260 0.50 -2.0
250,974 + Ga0059261_0260 0.72 -0.4
250,974 + Ga0059261_0260 0.72 -0.6
251,012 - Ga0059261_0260 0.78 -3.0
251,012 - Ga0059261_0260 0.78 -0.2
251,046 + Ga0059261_0260 0.84 +0.3
251,046 + Ga0059261_0260 0.84 -1.4
251,047 - Ga0059261_0260 0.84 -1.6
251,047 - Ga0059261_0260 0.84 -0.8
251,182 + +0.2
251,295 + Ga0059261_0261 0.15 +0.4
251,295 + Ga0059261_0261 0.15 +1.9
251,295 + Ga0059261_0261 0.15 +0.3
251,296 - Ga0059261_0261 0.15 -3.3
251,296 - Ga0059261_0261 0.15 +0.3
251,296 - Ga0059261_0261 0.15 -0.1
251,464 + Ga0059261_0261 0.30 -0.3
251,465 - Ga0059261_0261 0.30 -0.3
251,465 - Ga0059261_0261 0.30 +0.0
251,465 - Ga0059261_0261 0.30 +0.4
251,789 + Ga0059261_0261 0.60 +1.0
251,789 + Ga0059261_0261 0.60 +0.7
251,910 + Ga0059261_0261 0.71 +0.3
251,910 + Ga0059261_0261 0.71 -0.6
251,910 + Ga0059261_0261 0.71 -0.0
251,910 + Ga0059261_0261 0.71 +0.9
251,911 - Ga0059261_0261 0.72 -2.1
251,911 - Ga0059261_0261 0.72 -0.2
251,911 - Ga0059261_0261 0.72 +0.2
251,911 - Ga0059261_0261 0.72 -0.0
251,959 + Ga0059261_0261 0.76 -2.4
251,959 + Ga0059261_0261 0.76 +0.1
251,959 + Ga0059261_0261 0.76 -2.6
251,959 + Ga0059261_0261 0.76 -0.7
251,959 + Ga0059261_0261 0.76 +0.4
251,959 + Ga0059261_0261 0.76 +0.1
251,959 + Ga0059261_0261 0.76 +0.8
251,960 - Ga0059261_0261 0.76 +0.5
251,960 - Ga0059261_0261 0.76 +0.5
251,960 - Ga0059261_0261 0.76 +0.1
251,960 - Ga0059261_0261 0.76 +1.0
251,974 + Ga0059261_0261 0.77 +0.7
251,974 + Ga0059261_0261 0.77 +0.2
251,974 + Ga0059261_0261 0.77 -2.1
251,975 - Ga0059261_0261 0.78 -1.0

Or see this region's nucleotide sequence