Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23760

Experiment: L-Proline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS23750 and BWI76_RS23755 are separated by 52 nucleotidesBWI76_RS23755 and BWI76_RS23760 are separated by 159 nucleotidesBWI76_RS23760 and BWI76_RS23765 are separated by 80 nucleotidesBWI76_RS23765 and BWI76_RS23770 are separated by 89 nucleotides BWI76_RS23750: BWI76_RS23750 - arsenical efflux pump membrane protein ArsB, at 4,959,191 to 4,960,483 _RS23750 BWI76_RS23755: BWI76_RS23755 - transcriptional regulator, at 4,960,536 to 4,960,886 _RS23755 BWI76_RS23760: BWI76_RS23760 - tRNA-Gly, at 4,961,046 to 4,961,119 _RS23760 BWI76_RS23765: BWI76_RS23765 - peptidase M23, at 4,961,200 to 4,961,925 _RS23765 BWI76_RS23770: BWI76_RS23770 - LysR family transcriptional regulator, at 4,962,015 to 4,962,911 _RS23770 Position (kb) 4961 4962Strain fitness (log2 ratio) -2 -1 0 1 2at 4960.078 kb on - strandat 4960.078 kb on - strand, within BWI76_RS23750at 4960.179 kb on - strand, within BWI76_RS23750at 4960.189 kb on - strand, within BWI76_RS23750at 4960.243 kb on + strand, within BWI76_RS23750at 4960.243 kb on + strand, within BWI76_RS23750at 4960.331 kb on + strand, within BWI76_RS23750at 4960.382 kb on - strandat 4960.415 kb on + strandat 4960.415 kb on + strandat 4960.559 kb on + strandat 4960.598 kb on + strand, within BWI76_RS23755at 4960.687 kb on + strand, within BWI76_RS23755at 4960.695 kb on - strand, within BWI76_RS23755at 4960.695 kb on - strand, within BWI76_RS23755at 4960.695 kb on - strand, within BWI76_RS23755at 4960.695 kb on - strand, within BWI76_RS23755at 4960.766 kb on + strand, within BWI76_RS23755at 4960.766 kb on + strand, within BWI76_RS23755at 4960.874 kb on - strandat 4960.927 kb on - strandat 4961.000 kb on + strandat 4961.061 kb on - strand, within BWI76_RS23760at 4961.138 kb on + strandat 4961.372 kb on - strand, within BWI76_RS23765at 4961.383 kb on + strand, within BWI76_RS23765at 4961.598 kb on + strand, within BWI76_RS23765at 4961.710 kb on - strand, within BWI76_RS23765at 4961.782 kb on - strand, within BWI76_RS23765at 4961.822 kb on - strand, within BWI76_RS23765at 4961.929 kb on - strandat 4961.931 kb on + strandat 4961.949 kb on + strandat 4961.983 kb on - strandat 4961.995 kb on - strandat 4962.020 kb on - strandat 4962.071 kb on + strandat 4962.076 kb on + strandat 4962.076 kb on + strandat 4962.076 kb on + strandat 4962.079 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
remove
4,960,078 - +2.0
4,960,078 - BWI76_RS23750 0.69 +1.6
4,960,179 - BWI76_RS23750 0.76 -0.1
4,960,189 - BWI76_RS23750 0.77 -1.5
4,960,243 + BWI76_RS23750 0.81 +0.8
4,960,243 + BWI76_RS23750 0.81 -0.2
4,960,331 + BWI76_RS23750 0.88 -1.2
4,960,382 - +0.8
4,960,415 + +1.1
4,960,415 + -1.0
4,960,559 + +0.6
4,960,598 + BWI76_RS23755 0.18 -0.5
4,960,687 + BWI76_RS23755 0.43 -0.5
4,960,695 - BWI76_RS23755 0.45 -0.0
4,960,695 - BWI76_RS23755 0.45 -0.7
4,960,695 - BWI76_RS23755 0.45 +0.1
4,960,695 - BWI76_RS23755 0.45 -0.3
4,960,766 + BWI76_RS23755 0.66 -1.2
4,960,766 + BWI76_RS23755 0.66 +1.8
4,960,874 - -0.2
4,960,927 - -0.3
4,961,000 + +0.2
4,961,061 - BWI76_RS23760 0.20 -1.2
4,961,138 + -1.0
4,961,372 - BWI76_RS23765 0.24 +0.8
4,961,383 + BWI76_RS23765 0.25 -0.7
4,961,598 + BWI76_RS23765 0.55 -0.1
4,961,710 - BWI76_RS23765 0.70 +0.7
4,961,782 - BWI76_RS23765 0.80 -0.4
4,961,822 - BWI76_RS23765 0.86 -0.0
4,961,929 - +0.6
4,961,931 + -1.5
4,961,949 + -1.1
4,961,983 - +0.0
4,961,995 - -1.8
4,962,020 - +1.2
4,962,071 + +0.6
4,962,076 + -0.0
4,962,076 + -0.3
4,962,076 + +1.5
4,962,079 - +0.1

Or see this region's nucleotide sequence