Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14015

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14005 and AO356_14010 are separated by 311 nucleotidesAO356_14010 and AO356_14015 are separated by 106 nucleotidesAO356_14015 and AO356_14020 are separated by 303 nucleotidesAO356_14020 and AO356_14025 are separated by 0 nucleotides AO356_14005: AO356_14005 - cold-shock protein, at 3,180,950 to 3,181,162 _14005 AO356_14010: AO356_14010 - hypothetical protein, at 3,181,474 to 3,182,049 _14010 AO356_14015: AO356_14015 - hypothetical protein, at 3,182,156 to 3,182,578 _14015 AO356_14020: AO356_14020 - hypothetical protein, at 3,182,882 to 3,183,451 _14020 AO356_14025: AO356_14025 - acyltransferase, at 3,183,452 to 3,184,339 _14025 Position (kb) 3182 3183Strain fitness (log2 ratio) -2 -1 0 1 2at 3181.189 kb on + strandat 3181.261 kb on + strandat 3181.299 kb on + strandat 3181.300 kb on - strandat 3181.316 kb on + strandat 3181.381 kb on + strandat 3181.381 kb on + strandat 3181.399 kb on + strandat 3181.476 kb on - strandat 3181.550 kb on + strand, within AO356_14010at 3181.550 kb on + strand, within AO356_14010at 3181.550 kb on + strand, within AO356_14010at 3181.619 kb on + strand, within AO356_14010at 3181.619 kb on + strand, within AO356_14010at 3181.619 kb on + strand, within AO356_14010at 3181.619 kb on + strand, within AO356_14010at 3181.619 kb on + strand, within AO356_14010at 3181.620 kb on - strand, within AO356_14010at 3181.620 kb on - strand, within AO356_14010at 3181.620 kb on - strand, within AO356_14010at 3181.620 kb on - strand, within AO356_14010at 3181.664 kb on + strand, within AO356_14010at 3181.664 kb on + strand, within AO356_14010at 3181.665 kb on - strand, within AO356_14010at 3181.665 kb on - strand, within AO356_14010at 3181.721 kb on + strand, within AO356_14010at 3181.721 kb on + strand, within AO356_14010at 3181.722 kb on - strand, within AO356_14010at 3181.722 kb on - strand, within AO356_14010at 3181.722 kb on - strand, within AO356_14010at 3181.722 kb on - strand, within AO356_14010at 3181.722 kb on - strand, within AO356_14010at 3182.080 kb on + strandat 3182.080 kb on + strandat 3182.081 kb on - strandat 3182.161 kb on - strandat 3182.161 kb on - strandat 3182.161 kb on - strandat 3182.161 kb on - strandat 3182.161 kb on - strandat 3182.176 kb on - strandat 3182.295 kb on + strand, within AO356_14015at 3182.296 kb on - strand, within AO356_14015at 3182.296 kb on - strand, within AO356_14015at 3182.358 kb on + strand, within AO356_14015at 3182.358 kb on + strand, within AO356_14015at 3182.358 kb on + strand, within AO356_14015at 3182.359 kb on - strand, within AO356_14015at 3182.359 kb on - strand, within AO356_14015at 3182.359 kb on - strand, within AO356_14015at 3182.359 kb on - strand, within AO356_14015at 3182.452 kb on - strand, within AO356_14015at 3182.452 kb on - strand, within AO356_14015at 3182.452 kb on - strand, within AO356_14015at 3182.452 kb on - strand, within AO356_14015at 3182.452 kb on - strand, within AO356_14015at 3182.452 kb on - strand, within AO356_14015at 3182.452 kb on - strand, within AO356_14015at 3182.507 kb on + strand, within AO356_14015at 3182.508 kb on - strand, within AO356_14015at 3182.567 kb on + strandat 3182.568 kb on - strandat 3182.633 kb on + strandat 3182.652 kb on + strandat 3182.724 kb on + strandat 3182.740 kb on + strandat 3182.741 kb on - strandat 3182.788 kb on + strandat 3182.788 kb on + strandat 3182.788 kb on + strandat 3182.788 kb on + strandat 3182.788 kb on + strandat 3182.788 kb on + strandat 3182.789 kb on - strandat 3182.789 kb on - strandat 3182.789 kb on - strandat 3182.789 kb on - strandat 3182.789 kb on - strandat 3182.789 kb on - strandat 3182.789 kb on - strandat 3182.795 kb on - strandat 3182.876 kb on + strandat 3182.876 kb on + strandat 3182.876 kb on + strandat 3182.876 kb on + strandat 3182.876 kb on + strandat 3182.877 kb on - strandat 3182.877 kb on - strandat 3182.877 kb on - strandat 3183.380 kb on + strand, within AO356_14020at 3183.381 kb on - strand, within AO356_14020at 3183.381 kb on - strand, within AO356_14020at 3183.430 kb on + strandat 3183.430 kb on + strandat 3183.431 kb on - strandat 3183.431 kb on - strandat 3183.481 kb on + strandat 3183.481 kb on + strandat 3183.481 kb on + strandat 3183.481 kb on + strandat 3183.481 kb on + strandat 3183.482 kb on - strandat 3183.482 kb on - strandat 3183.482 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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3,181,189 + +0.4
3,181,261 + +0.5
3,181,299 + +0.4
3,181,300 - +0.3
3,181,316 + -0.3
3,181,381 + -0.8
3,181,381 + -0.5
3,181,399 + +0.2
3,181,476 - +0.2
3,181,550 + AO356_14010 0.13 +0.1
3,181,550 + AO356_14010 0.13 +1.4
3,181,550 + AO356_14010 0.13 -0.2
3,181,619 + AO356_14010 0.25 +0.5
3,181,619 + AO356_14010 0.25 -0.3
3,181,619 + AO356_14010 0.25 +0.2
3,181,619 + AO356_14010 0.25 -0.5
3,181,619 + AO356_14010 0.25 -0.3
3,181,620 - AO356_14010 0.25 -0.5
3,181,620 - AO356_14010 0.25 +0.2
3,181,620 - AO356_14010 0.25 +0.6
3,181,620 - AO356_14010 0.25 +0.4
3,181,664 + AO356_14010 0.33 +0.3
3,181,664 + AO356_14010 0.33 -0.2
3,181,665 - AO356_14010 0.33 +1.7
3,181,665 - AO356_14010 0.33 +1.6
3,181,721 + AO356_14010 0.43 +0.3
3,181,721 + AO356_14010 0.43 +1.4
3,181,722 - AO356_14010 0.43 +1.2
3,181,722 - AO356_14010 0.43 +0.2
3,181,722 - AO356_14010 0.43 -0.4
3,181,722 - AO356_14010 0.43 -2.5
3,181,722 - AO356_14010 0.43 -0.1
3,182,080 + -0.0
3,182,080 + +1.0
3,182,081 - +0.3
3,182,161 - +0.4
3,182,161 - +0.1
3,182,161 - +0.7
3,182,161 - +0.2
3,182,161 - -0.6
3,182,176 - +0.3
3,182,295 + AO356_14015 0.33 +1.5
3,182,296 - AO356_14015 0.33 +1.1
3,182,296 - AO356_14015 0.33 +1.0
3,182,358 + AO356_14015 0.48 +1.0
3,182,358 + AO356_14015 0.48 +1.3
3,182,358 + AO356_14015 0.48 +0.6
3,182,359 - AO356_14015 0.48 +0.6
3,182,359 - AO356_14015 0.48 -0.8
3,182,359 - AO356_14015 0.48 +1.0
3,182,359 - AO356_14015 0.48 +0.7
3,182,452 - AO356_14015 0.70 -1.4
3,182,452 - AO356_14015 0.70 +0.2
3,182,452 - AO356_14015 0.70 +0.7
3,182,452 - AO356_14015 0.70 +1.1
3,182,452 - AO356_14015 0.70 -1.4
3,182,452 - AO356_14015 0.70 +0.4
3,182,452 - AO356_14015 0.70 -0.2
3,182,507 + AO356_14015 0.83 +0.6
3,182,508 - AO356_14015 0.83 +0.5
3,182,567 + -1.2
3,182,568 - +0.3
3,182,633 + -0.5
3,182,652 + -0.2
3,182,724 + -0.2
3,182,740 + -0.2
3,182,741 - -0.2
3,182,788 + +0.5
3,182,788 + +0.2
3,182,788 + +0.1
3,182,788 + +0.4
3,182,788 + +0.1
3,182,788 + +0.6
3,182,789 - +0.4
3,182,789 - +0.2
3,182,789 - +0.0
3,182,789 - +0.2
3,182,789 - +0.2
3,182,789 - -0.7
3,182,789 - +1.1
3,182,795 - +0.2
3,182,876 + +1.0
3,182,876 + +0.9
3,182,876 + +0.2
3,182,876 + -0.5
3,182,876 + -0.8
3,182,877 - -1.4
3,182,877 - +0.3
3,182,877 - +0.6
3,183,380 + AO356_14020 0.87 +1.5
3,183,381 - AO356_14020 0.88 +0.7
3,183,381 - AO356_14020 0.88 +0.5
3,183,430 + -0.1
3,183,430 + -1.5
3,183,431 - -0.3
3,183,431 - +0.2
3,183,481 + -0.3
3,183,481 + +0.0
3,183,481 + +0.4
3,183,481 + -0.2
3,183,481 + -0.3
3,183,482 - +0.8
3,183,482 - +1.8
3,183,482 - -0.3

Or see this region's nucleotide sequence