Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04495

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04490 and AO356_04495 are separated by 333 nucleotidesAO356_04495 and AO356_04500 are separated by 270 nucleotidesAO356_04500 and AO356_04505 are separated by 373 nucleotides AO356_04490: AO356_04490 - chemotaxis protein, at 1,015,285 to 1,016,919 _04490 AO356_04495: AO356_04495 - short-chain dehydrogenase, at 1,017,253 to 1,017,528 _04495 AO356_04500: AO356_04500 - addiction module antitoxin, at 1,017,799 to 1,018,107 _04500 AO356_04505: AO356_04505 - hypothetical protein, at 1,018,481 to 1,019,590 _04505 Position (kb) 1017 1018Strain fitness (log2 ratio) -1 0 1 2at 1016.266 kb on - strand, within AO356_04490at 1016.295 kb on + strand, within AO356_04490at 1016.295 kb on + strand, within AO356_04490at 1016.296 kb on - strand, within AO356_04490at 1016.296 kb on - strand, within AO356_04490at 1016.485 kb on - strand, within AO356_04490at 1016.503 kb on + strand, within AO356_04490at 1016.504 kb on - strand, within AO356_04490at 1016.504 kb on - strand, within AO356_04490at 1016.609 kb on + strand, within AO356_04490at 1016.610 kb on - strand, within AO356_04490at 1016.610 kb on - strand, within AO356_04490at 1016.610 kb on - strand, within AO356_04490at 1016.627 kb on + strand, within AO356_04490at 1016.627 kb on + strand, within AO356_04490at 1016.628 kb on - strand, within AO356_04490at 1016.628 kb on - strand, within AO356_04490at 1016.673 kb on + strand, within AO356_04490at 1016.673 kb on + strand, within AO356_04490at 1016.673 kb on + strand, within AO356_04490at 1016.673 kb on + strand, within AO356_04490at 1016.673 kb on + strand, within AO356_04490at 1016.674 kb on - strand, within AO356_04490at 1016.674 kb on - strand, within AO356_04490at 1016.674 kb on - strand, within AO356_04490at 1016.674 kb on - strand, within AO356_04490at 1016.674 kb on - strand, within AO356_04490at 1016.674 kb on - strand, within AO356_04490at 1016.726 kb on + strand, within AO356_04490at 1016.727 kb on - strand, within AO356_04490at 1016.772 kb on + strandat 1016.772 kb on + strandat 1016.772 kb on + strandat 1016.772 kb on + strandat 1016.773 kb on - strandat 1016.773 kb on - strandat 1016.779 kb on - strandat 1016.945 kb on + strandat 1016.945 kb on + strandat 1016.946 kb on - strandat 1016.946 kb on - strandat 1016.950 kb on + strandat 1016.950 kb on + strandat 1016.950 kb on + strandat 1016.950 kb on + strandat 1016.950 kb on + strandat 1016.951 kb on - strandat 1016.951 kb on - strandat 1016.951 kb on - strandat 1016.951 kb on - strandat 1016.951 kb on - strandat 1016.951 kb on - strandat 1016.951 kb on - strandat 1016.951 kb on - strandat 1016.951 kb on - strandat 1016.951 kb on - strandat 1016.951 kb on - strandat 1016.954 kb on + strandat 1016.976 kb on + strandat 1016.976 kb on + strandat 1016.976 kb on + strandat 1016.976 kb on + strandat 1016.977 kb on - strandat 1016.977 kb on - strandat 1016.977 kb on - strandat 1016.977 kb on - strandat 1016.978 kb on + strandat 1016.979 kb on - strandat 1016.979 kb on - strandat 1016.979 kb on - strandat 1016.979 kb on - strandat 1016.987 kb on - strandat 1016.987 kb on - strandat 1017.072 kb on + strandat 1017.072 kb on + strandat 1017.072 kb on + strandat 1017.108 kb on + strandat 1017.108 kb on + strandat 1017.164 kb on + strandat 1017.164 kb on + strandat 1017.164 kb on + strandat 1017.164 kb on + strandat 1017.164 kb on + strandat 1017.164 kb on + strandat 1017.165 kb on - strandat 1017.165 kb on - strandat 1017.165 kb on - strandat 1017.166 kb on + strandat 1017.167 kb on - strandat 1017.185 kb on - strandat 1017.222 kb on + strandat 1017.222 kb on + strandat 1017.222 kb on + strandat 1017.222 kb on + strandat 1017.258 kb on + strandat 1017.258 kb on + strandat 1017.258 kb on + strandat 1017.259 kb on - strandat 1017.259 kb on - strandat 1017.259 kb on - strandat 1017.259 kb on - strandat 1017.259 kb on - strandat 1017.262 kb on + strandat 1017.262 kb on + strandat 1017.262 kb on + strandat 1017.262 kb on + strandat 1017.262 kb on + strandat 1017.262 kb on + strandat 1017.262 kb on + strandat 1017.262 kb on + strandat 1017.262 kb on + strandat 1017.263 kb on - strandat 1017.263 kb on - strandat 1017.263 kb on - strandat 1017.263 kb on - strandat 1017.263 kb on - strandat 1017.263 kb on - strandat 1017.263 kb on - strandat 1017.263 kb on - strandat 1017.274 kb on - strandat 1017.309 kb on + strand, within AO356_04495at 1017.351 kb on + strand, within AO356_04495at 1017.351 kb on + strand, within AO356_04495at 1017.352 kb on - strand, within AO356_04495at 1017.352 kb on - strand, within AO356_04495at 1017.352 kb on - strand, within AO356_04495at 1017.378 kb on - strand, within AO356_04495at 1017.476 kb on + strand, within AO356_04495at 1017.476 kb on + strand, within AO356_04495at 1017.476 kb on + strand, within AO356_04495at 1017.477 kb on - strand, within AO356_04495at 1017.477 kb on - strand, within AO356_04495at 1017.526 kb on + strandat 1017.526 kb on + strandat 1017.527 kb on - strandat 1017.527 kb on - strandat 1017.527 kb on - strandat 1017.537 kb on + strandat 1017.537 kb on + strandat 1017.537 kb on + strandat 1017.537 kb on + strandat 1017.544 kb on - strandat 1017.663 kb on + strandat 1017.677 kb on + strandat 1017.678 kb on - strandat 1017.678 kb on - strandat 1017.678 kb on - strandat 1017.678 kb on - strandat 1017.699 kb on + strandat 1017.699 kb on + strandat 1017.699 kb on + strandat 1017.699 kb on + strandat 1017.730 kb on + strandat 1017.730 kb on + strandat 1017.730 kb on + strandat 1017.730 kb on + strandat 1017.731 kb on - strandat 1017.731 kb on - strandat 1017.788 kb on + strandat 1017.854 kb on - strand, within AO356_04500at 1017.874 kb on + strand, within AO356_04500at 1017.874 kb on + strand, within AO356_04500at 1017.875 kb on - strand, within AO356_04500at 1017.917 kb on + strand, within AO356_04500at 1017.917 kb on + strand, within AO356_04500at 1017.917 kb on + strand, within AO356_04500at 1017.917 kb on + strand, within AO356_04500at 1017.918 kb on - strand, within AO356_04500at 1017.918 kb on - strand, within AO356_04500at 1017.918 kb on - strand, within AO356_04500at 1017.918 kb on - strand, within AO356_04500at 1017.979 kb on + strand, within AO356_04500at 1017.979 kb on + strand, within AO356_04500at 1017.979 kb on + strand, within AO356_04500at 1017.980 kb on - strand, within AO356_04500at 1017.980 kb on - strand, within AO356_04500at 1017.980 kb on - strand, within AO356_04500at 1017.980 kb on - strand, within AO356_04500at 1017.980 kb on - strand, within AO356_04500at 1017.980 kb on - strand, within AO356_04500at 1017.983 kb on + strand, within AO356_04500at 1017.984 kb on - strand, within AO356_04500at 1018.040 kb on + strand, within AO356_04500at 1018.040 kb on + strand, within AO356_04500at 1018.041 kb on - strand, within AO356_04500at 1018.041 kb on - strand, within AO356_04500at 1018.070 kb on - strand, within AO356_04500at 1018.070 kb on - strand, within AO356_04500at 1018.180 kb on + strandat 1018.181 kb on - strandat 1018.181 kb on - strandat 1018.181 kb on - strandat 1018.215 kb on - strandat 1018.215 kb on - strandat 1018.234 kb on + strandat 1018.234 kb on + strandat 1018.234 kb on + strandat 1018.234 kb on + strandat 1018.234 kb on + strandat 1018.234 kb on + strandat 1018.235 kb on - strandat 1018.235 kb on - strandat 1018.235 kb on - strandat 1018.235 kb on - strandat 1018.235 kb on - strandat 1018.235 kb on - strandat 1018.315 kb on + strandat 1018.342 kb on + strandat 1018.342 kb on + strandat 1018.342 kb on + strandat 1018.342 kb on + strandat 1018.343 kb on - strandat 1018.343 kb on - strandat 1018.468 kb on - strandat 1018.515 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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1,016,266 - AO356_04490 0.60 +0.2
1,016,295 + AO356_04490 0.62 +0.3
1,016,295 + AO356_04490 0.62 +1.0
1,016,296 - AO356_04490 0.62 -0.0
1,016,296 - AO356_04490 0.62 -0.2
1,016,485 - AO356_04490 0.73 -0.7
1,016,503 + AO356_04490 0.74 +0.4
1,016,504 - AO356_04490 0.75 +1.0
1,016,504 - AO356_04490 0.75 +0.6
1,016,609 + AO356_04490 0.81 -0.8
1,016,610 - AO356_04490 0.81 +1.0
1,016,610 - AO356_04490 0.81 -0.5
1,016,610 - AO356_04490 0.81 +0.5
1,016,627 + AO356_04490 0.82 -0.8
1,016,627 + AO356_04490 0.82 +0.4
1,016,628 - AO356_04490 0.82 +0.2
1,016,628 - AO356_04490 0.82 +0.1
1,016,673 + AO356_04490 0.85 +1.1
1,016,673 + AO356_04490 0.85 +0.3
1,016,673 + AO356_04490 0.85 +0.1
1,016,673 + AO356_04490 0.85 -0.0
1,016,673 + AO356_04490 0.85 -0.2
1,016,674 - AO356_04490 0.85 -1.0
1,016,674 - AO356_04490 0.85 -0.2
1,016,674 - AO356_04490 0.85 +0.2
1,016,674 - AO356_04490 0.85 +0.2
1,016,674 - AO356_04490 0.85 +0.3
1,016,674 - AO356_04490 0.85 -0.2
1,016,726 + AO356_04490 0.88 +1.1
1,016,727 - AO356_04490 0.88 +0.3
1,016,772 + +0.6
1,016,772 + +1.4
1,016,772 + -0.3
1,016,772 + +0.1
1,016,773 - +0.0
1,016,773 - -0.9
1,016,779 - +0.1
1,016,945 + -0.1
1,016,945 + -0.1
1,016,946 - -0.1
1,016,946 - +0.6
1,016,950 + -0.8
1,016,950 + +1.0
1,016,950 + +1.2
1,016,950 + +0.2
1,016,950 + +0.2
1,016,951 - +0.6
1,016,951 - -1.0
1,016,951 - +1.2
1,016,951 - -0.8
1,016,951 - +0.9
1,016,951 - +0.2
1,016,951 - +0.3
1,016,951 - -0.1
1,016,951 - +1.6
1,016,951 - +0.4
1,016,951 - +0.8
1,016,954 + -0.0
1,016,976 + +0.1
1,016,976 + -0.2
1,016,976 + +0.7
1,016,976 + +1.5
1,016,977 - +0.6
1,016,977 - +0.0
1,016,977 - -0.3
1,016,977 - +0.3
1,016,978 + -0.5
1,016,979 - +0.1
1,016,979 - -1.6
1,016,979 - +0.4
1,016,979 - -0.2
1,016,987 - +0.1
1,016,987 - -0.1
1,017,072 + +0.4
1,017,072 + +0.2
1,017,072 + +0.1
1,017,108 + +0.8
1,017,108 + -0.1
1,017,164 + -0.4
1,017,164 + +0.5
1,017,164 + -1.7
1,017,164 + +1.4
1,017,164 + +0.1
1,017,164 + +0.0
1,017,165 - +0.1
1,017,165 - +0.1
1,017,165 - +0.4
1,017,166 + -0.5
1,017,167 - +0.5
1,017,185 - +0.3
1,017,222 + -0.3
1,017,222 + +0.5
1,017,222 + +0.6
1,017,222 + +0.1
1,017,258 + +0.5
1,017,258 + -0.4
1,017,258 + -0.4
1,017,259 - +0.1
1,017,259 - +0.1
1,017,259 - +0.3
1,017,259 - +0.8
1,017,259 - -0.2
1,017,262 + -0.2
1,017,262 + +0.0
1,017,262 + +0.2
1,017,262 + -0.1
1,017,262 + +0.7
1,017,262 + +0.3
1,017,262 + -0.0
1,017,262 + +0.2
1,017,262 + +0.9
1,017,263 - +1.6
1,017,263 - +0.0
1,017,263 - -0.4
1,017,263 - +0.3
1,017,263 - -0.0
1,017,263 - -0.5
1,017,263 - -0.2
1,017,263 - +1.0
1,017,274 - -0.5
1,017,309 + AO356_04495 0.20 +0.8
1,017,351 + AO356_04495 0.36 -0.9
1,017,351 + AO356_04495 0.36 +0.5
1,017,352 - AO356_04495 0.36 +0.4
1,017,352 - AO356_04495 0.36 +0.3
1,017,352 - AO356_04495 0.36 -0.7
1,017,378 - AO356_04495 0.45 +0.6
1,017,476 + AO356_04495 0.81 +1.0
1,017,476 + AO356_04495 0.81 +0.4
1,017,476 + AO356_04495 0.81 +0.5
1,017,477 - AO356_04495 0.81 -0.6
1,017,477 - AO356_04495 0.81 +0.6
1,017,526 + +0.7
1,017,526 + +0.3
1,017,527 - -0.0
1,017,527 - +0.0
1,017,527 - +0.8
1,017,537 + -0.3
1,017,537 + +0.5
1,017,537 + +0.6
1,017,537 + +0.3
1,017,544 - +0.4
1,017,663 + +0.3
1,017,677 + -0.9
1,017,678 - +0.3
1,017,678 - +0.8
1,017,678 - +0.5
1,017,678 - +1.2
1,017,699 + +0.9
1,017,699 + +0.7
1,017,699 + +1.2
1,017,699 + -0.2
1,017,730 + -1.5
1,017,730 + +0.6
1,017,730 + +0.2
1,017,730 + +0.7
1,017,731 - +0.0
1,017,731 - -1.1
1,017,788 + -0.1
1,017,854 - AO356_04500 0.18 -1.3
1,017,874 + AO356_04500 0.24 -0.2
1,017,874 + AO356_04500 0.24 -0.1
1,017,875 - AO356_04500 0.25 +1.2
1,017,917 + AO356_04500 0.38 -0.9
1,017,917 + AO356_04500 0.38 +0.3
1,017,917 + AO356_04500 0.38 -0.4
1,017,917 + AO356_04500 0.38 +0.0
1,017,918 - AO356_04500 0.39 +0.2
1,017,918 - AO356_04500 0.39 +1.0
1,017,918 - AO356_04500 0.39 -0.2
1,017,918 - AO356_04500 0.39 +0.0
1,017,979 + AO356_04500 0.58 +0.9
1,017,979 + AO356_04500 0.58 -0.4
1,017,979 + AO356_04500 0.58 -1.1
1,017,980 - AO356_04500 0.59 -0.1
1,017,980 - AO356_04500 0.59 +0.8
1,017,980 - AO356_04500 0.59 -0.9
1,017,980 - AO356_04500 0.59 +0.0
1,017,980 - AO356_04500 0.59 +0.6
1,017,980 - AO356_04500 0.59 -0.1
1,017,983 + AO356_04500 0.60 -0.2
1,017,984 - AO356_04500 0.60 +0.1
1,018,040 + AO356_04500 0.78 +0.4
1,018,040 + AO356_04500 0.78 +0.6
1,018,041 - AO356_04500 0.78 -0.3
1,018,041 - AO356_04500 0.78 -0.2
1,018,070 - AO356_04500 0.88 -0.3
1,018,070 - AO356_04500 0.88 -0.7
1,018,180 + +0.6
1,018,181 - -0.2
1,018,181 - -1.7
1,018,181 - +1.9
1,018,215 - -0.1
1,018,215 - +0.2
1,018,234 + +0.2
1,018,234 + -0.3
1,018,234 + +0.0
1,018,234 + -0.7
1,018,234 + +1.0
1,018,234 + +0.2
1,018,235 - +0.8
1,018,235 - +0.3
1,018,235 - +0.0
1,018,235 - -0.3
1,018,235 - +0.4
1,018,235 - +0.2
1,018,315 + +0.5
1,018,342 + -0.5
1,018,342 + -0.2
1,018,342 + +0.7
1,018,342 + +0.4
1,018,343 - -0.2
1,018,343 - +0.6
1,018,468 - +0.4
1,018,515 + -0.4

Or see this region's nucleotide sequence