Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_22035 and AO353_22040 are separated by 100 nucleotides AO353_22040 and AO353_22045 overlap by 4 nucleotides AO353_22045 and AO353_22050 are separated by 214 nucleotides
AO353_22035: AO353_22035 - pyridoxine 5'-phosphate oxidase, at 4,825,997 to 4,826,644
_22035
AO353_22040: AO353_22040 - molybdenum cofactor biosynthesis protein B, at 4,826,745 to 4,827,299
_22040
AO353_22045: AO353_22045 - molybdenum cofactor biosynthesis protein MoaA, at 4,827,296 to 4,828,531
_22045
AO353_22050: AO353_22050 - protease, at 4,828,746 to 4,829,741
_22050
Position (kb)
4827
4828
4829 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4826.326 kb on + strand, within AO353_22035 at 4826.326 kb on + strand, within AO353_22035 at 4826.326 kb on + strand, within AO353_22035 at 4826.326 kb on + strand, within AO353_22035 at 4826.326 kb on + strand, within AO353_22035 at 4826.372 kb on + strand, within AO353_22035 at 4826.372 kb on + strand, within AO353_22035 at 4826.373 kb on - strand, within AO353_22035 at 4826.650 kb on + strand at 4826.650 kb on + strand at 4826.650 kb on + strand at 4826.650 kb on + strand at 4826.651 kb on - strand at 4826.667 kb on + strand at 4826.683 kb on + strand at 4826.683 kb on + strand at 4826.683 kb on + strand at 4826.683 kb on + strand at 4826.683 kb on + strand at 4826.684 kb on - strand at 4826.684 kb on - strand at 4826.728 kb on + strand at 4826.728 kb on + strand at 4826.728 kb on + strand at 4826.807 kb on + strand, within AO353_22040 at 4826.906 kb on + strand, within AO353_22040 at 4826.906 kb on + strand, within AO353_22040 at 4826.906 kb on + strand, within AO353_22040 at 4826.906 kb on + strand, within AO353_22040 at 4826.906 kb on + strand, within AO353_22040 at 4826.906 kb on + strand, within AO353_22040 at 4826.906 kb on + strand, within AO353_22040 at 4826.906 kb on + strand, within AO353_22040 at 4826.906 kb on + strand, within AO353_22040 at 4826.907 kb on - strand, within AO353_22040 at 4826.907 kb on - strand, within AO353_22040 at 4826.907 kb on - strand, within AO353_22040 at 4826.907 kb on - strand, within AO353_22040 at 4826.910 kb on + strand, within AO353_22040 at 4826.910 kb on + strand, within AO353_22040 at 4826.911 kb on - strand, within AO353_22040 at 4826.911 kb on - strand, within AO353_22040 at 4826.911 kb on - strand, within AO353_22040 at 4826.911 kb on - strand, within AO353_22040 at 4826.929 kb on + strand, within AO353_22040 at 4826.929 kb on + strand, within AO353_22040 at 4826.930 kb on - strand, within AO353_22040 at 4826.965 kb on + strand, within AO353_22040 at 4826.966 kb on - strand, within AO353_22040 at 4826.966 kb on - strand, within AO353_22040 at 4826.966 kb on - strand, within AO353_22040 at 4826.966 kb on - strand, within AO353_22040 at 4826.966 kb on - strand, within AO353_22040 at 4827.005 kb on + strand, within AO353_22040 at 4827.006 kb on - strand, within AO353_22040 at 4827.488 kb on + strand, within AO353_22045 at 4827.718 kb on + strand, within AO353_22045 at 4827.718 kb on + strand, within AO353_22045 at 4827.719 kb on - strand, within AO353_22045 at 4827.754 kb on - strand, within AO353_22045 at 4827.813 kb on + strand, within AO353_22045 at 4827.911 kb on + strand, within AO353_22045 at 4827.911 kb on + strand, within AO353_22045 at 4827.911 kb on + strand, within AO353_22045 at 4827.912 kb on - strand, within AO353_22045 at 4827.912 kb on - strand, within AO353_22045 at 4827.912 kb on - strand, within AO353_22045 at 4827.974 kb on + strand, within AO353_22045 at 4827.974 kb on + strand, within AO353_22045 at 4827.975 kb on - strand, within AO353_22045 at 4828.071 kb on + strand, within AO353_22045 at 4828.072 kb on - strand, within AO353_22045 at 4828.625 kb on + strand at 4828.626 kb on - strand at 4828.741 kb on + strand at 4828.741 kb on + strand at 4828.784 kb on - strand at 4828.818 kb on + strand at 4828.819 kb on - strand at 4828.819 kb on - strand at 4828.929 kb on + strand, within AO353_22050 at 4828.930 kb on - strand, within AO353_22050 at 4829.050 kb on - strand, within AO353_22050 at 4829.130 kb on + strand, within AO353_22050 at 4829.131 kb on - strand, within AO353_22050 at 4829.131 kb on - strand, within AO353_22050 at 4829.131 kb on - strand, within AO353_22050 at 4829.131 kb on - strand, within AO353_22050 at 4829.191 kb on + strand, within AO353_22050 at 4829.192 kb on - strand, within AO353_22050 at 4829.192 kb on - strand, within AO353_22050 at 4829.286 kb on + strand, within AO353_22050 at 4829.286 kb on + strand, within AO353_22050 at 4829.286 kb on + strand, within AO353_22050 at 4829.287 kb on - strand, within AO353_22050 at 4829.287 kb on - strand, within AO353_22050 at 4829.287 kb on - strand, within AO353_22050 at 4829.287 kb on - strand, within AO353_22050 at 4829.287 kb on - strand, within AO353_22050 at 4829.287 kb on - strand, within AO353_22050 at 4829.287 kb on - strand, within AO353_22050 at 4829.403 kb on + strand, within AO353_22050 at 4829.405 kb on + strand, within AO353_22050 at 4829.406 kb on - strand, within AO353_22050
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 4,826,326 + AO353_22035 0.51 -0.0 4,826,326 + AO353_22035 0.51 -0.0 4,826,326 + AO353_22035 0.51 -0.5 4,826,326 + AO353_22035 0.51 +0.7 4,826,326 + AO353_22035 0.51 +0.1 4,826,372 + AO353_22035 0.58 +0.6 4,826,372 + AO353_22035 0.58 -0.9 4,826,373 - AO353_22035 0.58 -0.1 4,826,650 + +1.3 4,826,650 + -2.2 4,826,650 + +1.5 4,826,650 + -1.0 4,826,651 - +0.2 4,826,667 + -1.3 4,826,683 + -1.0 4,826,683 + +0.2 4,826,683 + +0.2 4,826,683 + +1.9 4,826,683 + +0.6 4,826,684 - -0.5 4,826,684 - -0.5 4,826,728 + -0.8 4,826,728 + -1.4 4,826,728 + +1.3 4,826,807 + AO353_22040 0.11 +1.3 4,826,906 + AO353_22040 0.29 -0.2 4,826,906 + AO353_22040 0.29 +0.4 4,826,906 + AO353_22040 0.29 +0.2 4,826,906 + AO353_22040 0.29 +0.1 4,826,906 + AO353_22040 0.29 +0.1 4,826,906 + AO353_22040 0.29 -0.6 4,826,906 + AO353_22040 0.29 -0.3 4,826,906 + AO353_22040 0.29 +0.1 4,826,906 + AO353_22040 0.29 -2.0 4,826,907 - AO353_22040 0.29 -0.1 4,826,907 - AO353_22040 0.29 +0.8 4,826,907 - AO353_22040 0.29 +0.1 4,826,907 - AO353_22040 0.29 -0.5 4,826,910 + AO353_22040 0.30 -1.4 4,826,910 + AO353_22040 0.30 +0.6 4,826,911 - AO353_22040 0.30 -0.1 4,826,911 - AO353_22040 0.30 +1.9 4,826,911 - AO353_22040 0.30 -2.3 4,826,911 - AO353_22040 0.30 +0.3 4,826,929 + AO353_22040 0.33 -0.0 4,826,929 + AO353_22040 0.33 -0.4 4,826,930 - AO353_22040 0.33 +1.9 4,826,965 + AO353_22040 0.40 -2.3 4,826,966 - AO353_22040 0.40 -0.0 4,826,966 - AO353_22040 0.40 +0.7 4,826,966 - AO353_22040 0.40 -0.3 4,826,966 - AO353_22040 0.40 +0.6 4,826,966 - AO353_22040 0.40 -1.5 4,827,005 + AO353_22040 0.47 +1.3 4,827,006 - AO353_22040 0.47 +0.3 4,827,488 + AO353_22045 0.16 -0.7 4,827,718 + AO353_22045 0.34 -0.1 4,827,718 + AO353_22045 0.34 -1.0 4,827,719 - AO353_22045 0.34 -0.1 4,827,754 - AO353_22045 0.37 -1.8 4,827,813 + AO353_22045 0.42 -0.1 4,827,911 + AO353_22045 0.50 -0.9 4,827,911 + AO353_22045 0.50 -1.2 4,827,911 + AO353_22045 0.50 +0.2 4,827,912 - AO353_22045 0.50 -0.6 4,827,912 - AO353_22045 0.50 +1.3 4,827,912 - AO353_22045 0.50 -0.8 4,827,974 + AO353_22045 0.55 -1.0 4,827,974 + AO353_22045 0.55 -1.0 4,827,975 - AO353_22045 0.55 -0.3 4,828,071 + AO353_22045 0.63 -0.5 4,828,072 - AO353_22045 0.63 -0.2 4,828,625 + -0.7 4,828,626 - +0.4 4,828,741 + -0.1 4,828,741 + +0.9 4,828,784 - +0.8 4,828,818 + +0.4 4,828,819 - +0.5 4,828,819 - +1.3 4,828,929 + AO353_22050 0.18 +0.6 4,828,930 - AO353_22050 0.18 -0.4 4,829,050 - AO353_22050 0.31 +0.6 4,829,130 + AO353_22050 0.39 -0.7 4,829,131 - AO353_22050 0.39 -0.1 4,829,131 - AO353_22050 0.39 +0.6 4,829,131 - AO353_22050 0.39 +1.0 4,829,131 - AO353_22050 0.39 +0.6 4,829,191 + AO353_22050 0.45 -0.8 4,829,192 - AO353_22050 0.45 -1.1 4,829,192 - AO353_22050 0.45 +0.1 4,829,286 + AO353_22050 0.54 +2.0 4,829,286 + AO353_22050 0.54 +0.8 4,829,286 + AO353_22050 0.54 +0.5 4,829,287 - AO353_22050 0.54 -0.6 4,829,287 - AO353_22050 0.54 -0.6 4,829,287 - AO353_22050 0.54 +0.4 4,829,287 - AO353_22050 0.54 +0.2 4,829,287 - AO353_22050 0.54 -0.3 4,829,287 - AO353_22050 0.54 +0.3 4,829,287 - AO353_22050 0.54 -0.0 4,829,403 + AO353_22050 0.66 +1.3 4,829,405 + AO353_22050 0.66 +0.6 4,829,406 - AO353_22050 0.66 -0.2
Or see this region's nucleotide sequence