Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02600

Experiment: LB 10C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02590 and AO353_02595 are separated by 82 nucleotidesAO353_02595 and AO353_02600 are separated by 2 nucleotidesAO353_02600 and AO353_02605 overlap by 4 nucleotides AO353_02590: AO353_02590 - MarR family transcriptional regulator, at 553,985 to 554,389 _02590 AO353_02595: AO353_02595 - cobalamin synthase, at 554,472 to 555,203 _02595 AO353_02600: AO353_02600 - alpha-ribazole phosphatase, at 555,206 to 555,781 _02600 AO353_02605: AO353_02605 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 555,778 to 556,833 _02605 Position (kb) 555 556Strain fitness (log2 ratio) -2 -1 0 1at 554.283 kb on + strand, within AO353_02590at 554.283 kb on + strand, within AO353_02590at 554.283 kb on + strand, within AO353_02590at 554.284 kb on - strand, within AO353_02590at 554.325 kb on + strand, within AO353_02590at 554.326 kb on - strand, within AO353_02590at 554.369 kb on + strandat 554.369 kb on + strandat 554.370 kb on - strandat 554.370 kb on - strandat 554.385 kb on - strandat 554.385 kb on - strandat 554.385 kb on - strandat 554.398 kb on + strandat 554.399 kb on - strandat 554.399 kb on - strandat 554.399 kb on - strandat 554.399 kb on - strandat 554.400 kb on + strandat 554.400 kb on + strandat 554.401 kb on - strandat 554.401 kb on - strandat 554.418 kb on - strandat 554.418 kb on - strandat 554.418 kb on - strandat 554.735 kb on - strand, within AO353_02595at 554.735 kb on - strand, within AO353_02595at 554.804 kb on + strand, within AO353_02595at 554.805 kb on - strand, within AO353_02595at 554.805 kb on - strand, within AO353_02595at 554.805 kb on - strand, within AO353_02595at 555.103 kb on + strand, within AO353_02595at 555.103 kb on + strand, within AO353_02595at 555.373 kb on - strand, within AO353_02600at 555.373 kb on - strand, within AO353_02600at 555.373 kb on - strand, within AO353_02600at 555.373 kb on - strand, within AO353_02600at 555.373 kb on - strand, within AO353_02600at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.938 kb on - strand, within AO353_02605at 555.938 kb on - strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.085 kb on + strand, within AO353_02605at 556.086 kb on - strand, within AO353_02605at 556.198 kb on - strand, within AO353_02605at 556.296 kb on + strand, within AO353_02605at 556.296 kb on + strand, within AO353_02605at 556.296 kb on + strand, within AO353_02605at 556.296 kb on + strand, within AO353_02605at 556.323 kb on + strand, within AO353_02605at 556.378 kb on + strand, within AO353_02605at 556.379 kb on - strand, within AO353_02605at 556.379 kb on - strand, within AO353_02605

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 10C
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554,283 + AO353_02590 0.74 -0.5
554,283 + AO353_02590 0.74 -0.2
554,283 + AO353_02590 0.74 -0.4
554,284 - AO353_02590 0.74 -0.1
554,325 + AO353_02590 0.84 -0.3
554,326 - AO353_02590 0.84 -0.7
554,369 + -0.4
554,369 + -1.4
554,370 - -1.0
554,370 - -0.1
554,385 - -0.1
554,385 - -0.0
554,385 - -0.5
554,398 + -1.0
554,399 - -1.2
554,399 - +0.0
554,399 - -1.3
554,399 - +1.1
554,400 + -0.2
554,400 + +0.6
554,401 - -0.2
554,401 - -0.8
554,418 - +0.5
554,418 - +1.3
554,418 - -0.7
554,735 - AO353_02595 0.36 -0.8
554,735 - AO353_02595 0.36 -0.7
554,804 + AO353_02595 0.45 +0.6
554,805 - AO353_02595 0.45 -1.3
554,805 - AO353_02595 0.45 -0.7
554,805 - AO353_02595 0.45 -1.0
555,103 + AO353_02595 0.86 +0.4
555,103 + AO353_02595 0.86 +0.5
555,373 - AO353_02600 0.29 -0.9
555,373 - AO353_02600 0.29 +0.8
555,373 - AO353_02600 0.29 -1.1
555,373 - AO353_02600 0.29 -0.9
555,373 - AO353_02600 0.29 -0.2
555,937 + AO353_02605 0.15 +0.5
555,937 + AO353_02605 0.15 +0.5
555,937 + AO353_02605 0.15 -0.7
555,937 + AO353_02605 0.15 -0.4
555,937 + AO353_02605 0.15 +0.8
555,937 + AO353_02605 0.15 +0.6
555,937 + AO353_02605 0.15 +0.6
555,938 - AO353_02605 0.15 -0.5
555,938 - AO353_02605 0.15 -0.5
556,038 + AO353_02605 0.25 +0.5
556,038 + AO353_02605 0.25 +0.2
556,038 + AO353_02605 0.25 -0.5
556,038 + AO353_02605 0.25 +0.7
556,038 + AO353_02605 0.25 -1.3
556,038 + AO353_02605 0.25 -0.9
556,039 - AO353_02605 0.25 -1.1
556,039 - AO353_02605 0.25 +0.1
556,039 - AO353_02605 0.25 -0.1
556,039 - AO353_02605 0.25 -1.1
556,039 - AO353_02605 0.25 +0.6
556,039 - AO353_02605 0.25 +0.9
556,039 - AO353_02605 0.25 -0.7
556,039 - AO353_02605 0.25 +0.6
556,039 - AO353_02605 0.25 -0.1
556,085 + AO353_02605 0.29 +0.3
556,086 - AO353_02605 0.29 -0.3
556,198 - AO353_02605 0.40 +0.6
556,296 + AO353_02605 0.49 -2.1
556,296 + AO353_02605 0.49 -0.3
556,296 + AO353_02605 0.49 -0.3
556,296 + AO353_02605 0.49 +0.5
556,323 + AO353_02605 0.52 +0.3
556,378 + AO353_02605 0.57 +0.8
556,379 - AO353_02605 0.57 +0.3
556,379 - AO353_02605 0.57 +0.7

Or see this region's nucleotide sequence