Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1896

Experiment: 6 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1895 and DvMF_1896 are separated by 144 nucleotidesDvMF_1896 and DvMF_1897 are separated by 185 nucleotides DvMF_1895: DvMF_1895 - hypothetical protein (RefSeq), at 2,332,910 to 2,334,592 _1895 DvMF_1896: DvMF_1896 - transferase hexapeptide repeat containing protein (RefSeq), at 2,334,737 to 2,335,408 _1896 DvMF_1897: DvMF_1897 - polysaccharide biosynthesis protein (RefSeq), at 2,335,594 to 2,337,129 _1897 Position (kb) 2334 2335 2336Strain fitness (log2 ratio) -1 0 1 2 3at 2333.800 kb on - strand, within DvMF_1895at 2333.922 kb on - strand, within DvMF_1895at 2334.084 kb on + strand, within DvMF_1895at 2334.127 kb on + strand, within DvMF_1895at 2334.162 kb on - strand, within DvMF_1895at 2334.203 kb on - strand, within DvMF_1895at 2334.243 kb on + strand, within DvMF_1895at 2334.335 kb on - strand, within DvMF_1895at 2334.343 kb on - strand, within DvMF_1895at 2334.448 kb on + strandat 2334.470 kb on + strandat 2334.585 kb on + strandat 2334.783 kb on + strandat 2334.783 kb on + strandat 2335.049 kb on - strand, within DvMF_1896at 2335.341 kb on + strandat 2335.360 kb on - strandat 2335.572 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 day starvation, 37C
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2,333,800 - DvMF_1895 0.53 +0.8
2,333,922 - DvMF_1895 0.60 -0.4
2,334,084 + DvMF_1895 0.70 +0.9
2,334,127 + DvMF_1895 0.72 +0.3
2,334,162 - DvMF_1895 0.74 -0.3
2,334,203 - DvMF_1895 0.77 -0.3
2,334,243 + DvMF_1895 0.79 -0.5
2,334,335 - DvMF_1895 0.85 -0.2
2,334,343 - DvMF_1895 0.85 -0.1
2,334,448 + +0.2
2,334,470 + +1.5
2,334,585 + +0.8
2,334,783 + +2.8
2,334,783 + -0.3
2,335,049 - DvMF_1896 0.46 +0.4
2,335,341 + +0.4
2,335,360 - +0.4
2,335,572 - +1.1

Or see this region's nucleotide sequence