Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1245

Experiment: 6 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1244 and DvMF_1245 are separated by 213 nucleotidesDvMF_1245 and DvMF_1246 are separated by 537 nucleotides DvMF_1244: DvMF_1244 - hypothetical protein (RefSeq), at 1,535,338 to 1,536,393 _1244 DvMF_1245: DvMF_1245 - molybdopterin oxidoreductase (RefSeq), at 1,536,607 to 1,539,450 _1245 DvMF_1246: DvMF_1246 - D-alanine--D-alanine ligase (RefSeq), at 1,539,988 to 1,541,214 _1246 Position (kb) 1536 1537 1538 1539 1540Strain fitness (log2 ratio) -1 0 1at 1535.741 kb on - strand, within DvMF_1244at 1535.741 kb on - strand, within DvMF_1244at 1535.874 kb on + strand, within DvMF_1244at 1536.004 kb on + strand, within DvMF_1244at 1536.077 kb on + strand, within DvMF_1244at 1536.163 kb on - strand, within DvMF_1244at 1536.283 kb on - strand, within DvMF_1244at 1536.499 kb on + strandat 1536.917 kb on - strand, within DvMF_1245at 1536.974 kb on - strand, within DvMF_1245at 1537.048 kb on - strand, within DvMF_1245at 1537.048 kb on - strand, within DvMF_1245at 1537.300 kb on + strand, within DvMF_1245at 1537.373 kb on - strand, within DvMF_1245at 1537.449 kb on + strand, within DvMF_1245at 1537.464 kb on + strand, within DvMF_1245at 1537.464 kb on + strand, within DvMF_1245at 1537.549 kb on + strand, within DvMF_1245at 1537.553 kb on - strand, within DvMF_1245at 1537.684 kb on - strand, within DvMF_1245at 1537.695 kb on + strand, within DvMF_1245at 1537.695 kb on + strand, within DvMF_1245at 1538.320 kb on - strand, within DvMF_1245at 1538.458 kb on + strand, within DvMF_1245at 1538.479 kb on - strand, within DvMF_1245at 1538.564 kb on - strand, within DvMF_1245at 1538.565 kb on + strand, within DvMF_1245at 1538.651 kb on - strand, within DvMF_1245at 1538.751 kb on + strand, within DvMF_1245at 1538.913 kb on - strand, within DvMF_1245at 1538.961 kb on + strand, within DvMF_1245at 1539.010 kb on + strand, within DvMF_1245at 1539.189 kb on - strandat 1539.418 kb on + strandat 1539.504 kb on + strandat 1539.523 kb on + strandat 1539.531 kb on - strandat 1539.531 kb on - strandat 1539.596 kb on + strandat 1539.664 kb on - strandat 1539.678 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 day starvation, 37C
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1,535,741 - DvMF_1244 0.38 +1.0
1,535,741 - DvMF_1244 0.38 +0.6
1,535,874 + DvMF_1244 0.51 +0.2
1,536,004 + DvMF_1244 0.63 +0.6
1,536,077 + DvMF_1244 0.70 -0.1
1,536,163 - DvMF_1244 0.78 +0.8
1,536,283 - DvMF_1244 0.89 +0.2
1,536,499 + +1.1
1,536,917 - DvMF_1245 0.11 +0.7
1,536,974 - DvMF_1245 0.13 +0.2
1,537,048 - DvMF_1245 0.16 +1.2
1,537,048 - DvMF_1245 0.16 +1.5
1,537,300 + DvMF_1245 0.24 +0.5
1,537,373 - DvMF_1245 0.27 +0.5
1,537,449 + DvMF_1245 0.30 +0.5
1,537,464 + DvMF_1245 0.30 +1.1
1,537,464 + DvMF_1245 0.30 +0.3
1,537,549 + DvMF_1245 0.33 +0.3
1,537,553 - DvMF_1245 0.33 -0.1
1,537,684 - DvMF_1245 0.38 +0.1
1,537,695 + DvMF_1245 0.38 +0.4
1,537,695 + DvMF_1245 0.38 -0.1
1,538,320 - DvMF_1245 0.60 +0.4
1,538,458 + DvMF_1245 0.65 +0.5
1,538,479 - DvMF_1245 0.66 +0.4
1,538,564 - DvMF_1245 0.69 +0.2
1,538,565 + DvMF_1245 0.69 +0.2
1,538,651 - DvMF_1245 0.72 +0.3
1,538,751 + DvMF_1245 0.75 +0.3
1,538,913 - DvMF_1245 0.81 +0.6
1,538,961 + DvMF_1245 0.83 +1.3
1,539,010 + DvMF_1245 0.84 +0.4
1,539,189 - +0.3
1,539,418 + -1.4
1,539,504 + +0.3
1,539,523 + +0.8
1,539,531 - +0.3
1,539,531 - +1.2
1,539,596 + -0.2
1,539,664 - +0.6
1,539,678 + +0.6

Or see this region's nucleotide sequence