Experiment: 6 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0061 and DvMF_0062 are separated by 33 nucleotides DvMF_0062 and DvMF_0063 are separated by 158 nucleotides DvMF_0063 and DvMF_0064 overlap by 4 nucleotides DvMF_0064 and DvMF_0065 are separated by 501 nucleotides
DvMF_0061: DvMF_0061 - primosomal protein N' (RefSeq), at 79,119 to 81,539
_0061
DvMF_0062: DvMF_0062 - hypothetical protein (RefSeq), at 81,573 to 81,740
_0062
DvMF_0063: DvMF_0063 - response regulator receiver protein (RefSeq), at 81,899 to 82,291
_0063
DvMF_0064: DvMF_0064 - histidine kinase (RefSeq), at 82,288 to 84,084
_0064
DvMF_0065: DvMF_0065 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 84,586 to 85,872
_0065
Position (kb) 82
83
84
85 Strain fitness (log2 ratio) -1
0
1
2 at 81.610 kb on + strand, within DvMF_0062 at 81.671 kb on - strand, within DvMF_0062 at 81.896 kb on + strand at 82.023 kb on - strand, within DvMF_0063 at 82.325 kb on + strand at 82.484 kb on + strand, within DvMF_0064 at 82.538 kb on + strand, within DvMF_0064 at 82.692 kb on - strand, within DvMF_0064 at 82.741 kb on - strand, within DvMF_0064 at 82.790 kb on + strand, within DvMF_0064 at 82.837 kb on + strand, within DvMF_0064 at 83.051 kb on + strand, within DvMF_0064 at 83.137 kb on + strand, within DvMF_0064 at 83.191 kb on + strand, within DvMF_0064 at 83.565 kb on - strand, within DvMF_0064 at 83.875 kb on + strand, within DvMF_0064 at 84.197 kb on + strand at 84.500 kb on + strand at 84.662 kb on - strand at 84.702 kb on + strand at 84.786 kb on + strand, within DvMF_0065 at 84.786 kb on + strand, within DvMF_0065 at 84.984 kb on + strand, within DvMF_0065 at 84.992 kb on - strand, within DvMF_0065
Per-strain Table
Position Strand Gene LocusTag Fraction 6 day starvation, 37C remove 81,610 + DvMF_0062 0.22 +0.4 81,671 - DvMF_0062 0.58 +0.1 81,896 + +0.7 82,023 - DvMF_0063 0.32 +0.5 82,325 + +0.6 82,484 + DvMF_0064 0.11 +1.0 82,538 + DvMF_0064 0.14 +0.5 82,692 - DvMF_0064 0.22 +0.8 82,741 - DvMF_0064 0.25 +1.2 82,790 + DvMF_0064 0.28 +1.7 82,837 + DvMF_0064 0.31 +0.9 83,051 + DvMF_0064 0.42 +1.1 83,137 + DvMF_0064 0.47 +1.1 83,191 + DvMF_0064 0.50 +0.9 83,565 - DvMF_0064 0.71 +0.2 83,875 + DvMF_0064 0.88 +1.2 84,197 + +1.8 84,500 + +0.6 84,662 - -0.1 84,702 + +0.8 84,786 + DvMF_0065 0.16 +0.6 84,786 + DvMF_0065 0.16 +0.5 84,984 + DvMF_0065 0.31 +0.9 84,992 - DvMF_0065 0.32 +0.7
Or see this region's nucleotide sequence