Experiment: 6 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0022 and DvMF_0023 are separated by 58 nucleotides DvMF_0023 and DvMF_0024 are separated by 81 nucleotides DvMF_0024 and DvMF_0025 are separated by 44 nucleotides DvMF_0025 and DvMF_0026 are separated by 235 nucleotides
DvMF_0022: DvMF_0022 - metal dependent phosphohydrolase (RefSeq), at 28,080 to 29,165
_0022
DvMF_0023: DvMF_0023 - dTMP kinase (RefSeq), at 29,224 to 29,871
_0023
DvMF_0024: DvMF_0024 - histone deacetylase superfamily (RefSeq), at 29,953 to 31,272
_0024
DvMF_0025: DvMF_0025 - protein of unknown function DUF1121 (RefSeq), at 31,317 to 32,003
_0025
DvMF_0026: DvMF_0026 - succinyl-CoA synthetase, alpha subunit (RefSeq), at 32,239 to 34,368
_0026
Position (kb) 29
30
31
32 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 29.002 kb on - strand, within DvMF_0022 at 29.928 kb on + strand at 30.401 kb on + strand, within DvMF_0024 at 30.587 kb on - strand, within DvMF_0024 at 30.616 kb on - strand, within DvMF_0024 at 30.725 kb on - strand, within DvMF_0024 at 30.900 kb on - strand, within DvMF_0024 at 31.335 kb on - strand at 31.678 kb on + strand, within DvMF_0025 at 31.793 kb on - strand, within DvMF_0025 at 31.803 kb on - strand, within DvMF_0025 at 31.865 kb on - strand, within DvMF_0025 at 32.154 kb on - strand at 32.164 kb on - strand at 32.165 kb on - strand at 32.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6 day starvation, 37C remove 29,002 - DvMF_0022 0.85 +0.6 29,928 + +2.1 30,401 + DvMF_0024 0.34 -2.3 30,587 - DvMF_0024 0.48 -1.2 30,616 - DvMF_0024 0.50 -1.9 30,725 - DvMF_0024 0.58 -0.5 30,900 - DvMF_0024 0.72 -1.3 31,335 - +0.3 31,678 + DvMF_0025 0.53 -0.1 31,793 - DvMF_0025 0.69 +3.0 31,803 - DvMF_0025 0.71 +0.5 31,865 - DvMF_0025 0.80 +0.4 32,154 - +0.6 32,164 - +0.4 32,165 - +1.6 32,175 - -0.0
Or see this region's nucleotide sequence