Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2320

Experiment: L-Glutamic (C); no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2318 and Ga0059261_2319 overlap by 1 nucleotidesGa0059261_2319 and Ga0059261_2320 overlap by 4 nucleotidesGa0059261_2320 and Ga0059261_2321 are separated by 210 nucleotidesGa0059261_2321 and Ga0059261_2322 are separated by 25 nucleotides Ga0059261_2318: Ga0059261_2318 - Beta-lactamase class C and other penicillin binding proteins, at 2,430,259 to 2,431,560 _2318 Ga0059261_2319: Ga0059261_2319 - NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding, at 2,431,560 to 2,432,432 _2319 Ga0059261_2320: Ga0059261_2320 - Uncharacterized relative of glutathione S-transferase, MAPEG superfamily, at 2,432,429 to 2,432,860 _2320 Ga0059261_2321: Ga0059261_2321 - LSU ribosomal protein L32P, at 2,433,071 to 2,433,250 _2321 Ga0059261_2322: Ga0059261_2322 - phosphate:acyl-[acyl carrier protein] acyltransferase, at 2,433,276 to 2,434,307 _2322 Position (kb) 2432 2433Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2431.489 kb on + strandat 2431.489 kb on + strandat 2431.489 kb on + strandat 2431.489 kb on + strandat 2431.489 kb on + strandat 2431.489 kb on + strandat 2431.489 kb on + strandat 2431.489 kb on + strandat 2431.489 kb on + strandat 2431.489 kb on + strandat 2431.489 kb on + strandat 2431.489 kb on + strandat 2431.489 kb on + strandat 2431.490 kb on - strandat 2431.490 kb on - strandat 2431.490 kb on - strandat 2431.490 kb on - strandat 2431.490 kb on - strandat 2431.490 kb on - strandat 2431.490 kb on - strandat 2431.540 kb on + strandat 2431.541 kb on - strandat 2431.541 kb on - strandat 2431.541 kb on - strandat 2431.770 kb on + strand, within Ga0059261_2319at 2431.770 kb on + strand, within Ga0059261_2319at 2431.770 kb on + strand, within Ga0059261_2319at 2431.770 kb on + strand, within Ga0059261_2319at 2431.771 kb on - strand, within Ga0059261_2319at 2431.771 kb on - strand, within Ga0059261_2319at 2431.771 kb on - strand, within Ga0059261_2319at 2431.771 kb on - strand, within Ga0059261_2319at 2431.771 kb on - strand, within Ga0059261_2319at 2431.771 kb on - strandat 2431.771 kb on - strand, within Ga0059261_2319at 2431.771 kb on - strand, within Ga0059261_2319at 2431.772 kb on + strand, within Ga0059261_2319at 2431.772 kb on + strand, within Ga0059261_2319at 2431.772 kb on + strand, within Ga0059261_2319at 2431.773 kb on - strand, within Ga0059261_2319at 2431.773 kb on - strand, within Ga0059261_2319at 2431.887 kb on + strand, within Ga0059261_2319at 2431.887 kb on + strand, within Ga0059261_2319at 2431.887 kb on + strand, within Ga0059261_2319at 2431.887 kb on + strand, within Ga0059261_2319at 2431.887 kb on + strand, within Ga0059261_2319at 2431.887 kb on + strand, within Ga0059261_2319at 2431.887 kb on + strand, within Ga0059261_2319at 2431.887 kb on + strand, within Ga0059261_2319at 2431.888 kb on - strand, within Ga0059261_2319at 2431.888 kb on - strand, within Ga0059261_2319at 2432.052 kb on + strand, within Ga0059261_2319at 2432.052 kb on + strand, within Ga0059261_2319at 2432.052 kb on + strand, within Ga0059261_2319at 2432.053 kb on - strand, within Ga0059261_2319at 2432.053 kb on - strandat 2432.053 kb on - strand, within Ga0059261_2319at 2432.053 kb on - strand, within Ga0059261_2319at 2432.104 kb on - strand, within Ga0059261_2319at 2432.205 kb on + strand, within Ga0059261_2319at 2432.206 kb on - strand, within Ga0059261_2319at 2432.206 kb on - strand, within Ga0059261_2319at 2432.206 kb on - strand, within Ga0059261_2319at 2432.206 kb on - strand, within Ga0059261_2319at 2432.388 kb on + strandat 2432.388 kb on + strandat 2432.388 kb on + strandat 2432.389 kb on - strandat 2432.389 kb on - strandat 2432.389 kb on - strandat 2432.430 kb on + strandat 2432.430 kb on + strandat 2432.431 kb on - strandat 2432.431 kb on - strandat 2432.431 kb on - strandat 2432.431 kb on - strandat 2432.478 kb on + strand, within Ga0059261_2320at 2432.478 kb on + strand, within Ga0059261_2320at 2432.479 kb on - strand, within Ga0059261_2320at 2432.479 kb on - strand, within Ga0059261_2320at 2432.496 kb on + strand, within Ga0059261_2320at 2432.496 kb on + strand, within Ga0059261_2320at 2432.496 kb on + strand, within Ga0059261_2320at 2432.497 kb on - strand, within Ga0059261_2320at 2432.497 kb on - strand, within Ga0059261_2320at 2432.497 kb on - strand, within Ga0059261_2320at 2432.497 kb on - strand, within Ga0059261_2320at 2432.685 kb on + strand, within Ga0059261_2320at 2432.685 kb on + strand, within Ga0059261_2320at 2432.685 kb on + strand, within Ga0059261_2320at 2432.686 kb on - strand, within Ga0059261_2320at 2432.848 kb on + strandat 2432.849 kb on - strandat 2432.849 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C); no added vitamins
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2,431,489 + -0.2
2,431,489 + -0.3
2,431,489 + -0.2
2,431,489 + +0.4
2,431,489 + -0.3
2,431,489 + -0.5
2,431,489 + +0.2
2,431,489 + +0.0
2,431,489 + -2.8
2,431,489 + +0.9
2,431,489 + +0.1
2,431,489 + -3.4
2,431,489 + -0.1
2,431,490 - +0.0
2,431,490 - +0.0
2,431,490 - +0.8
2,431,490 - +1.3
2,431,490 - -0.5
2,431,490 - +0.9
2,431,490 - +0.5
2,431,540 + -0.8
2,431,541 - -0.3
2,431,541 - +0.9
2,431,541 - +0.8
2,431,770 + Ga0059261_2319 0.24 +0.2
2,431,770 + Ga0059261_2319 0.24 -0.4
2,431,770 + Ga0059261_2319 0.24 +0.6
2,431,770 + Ga0059261_2319 0.24 +0.4
2,431,771 - Ga0059261_2319 0.24 +0.4
2,431,771 - Ga0059261_2319 0.24 +0.2
2,431,771 - Ga0059261_2319 0.24 -0.2
2,431,771 - Ga0059261_2319 0.24 -1.8
2,431,771 - Ga0059261_2319 0.24 +0.7
2,431,771 - +0.2
2,431,771 - Ga0059261_2319 0.24 +0.3
2,431,771 - Ga0059261_2319 0.24 -0.4
2,431,772 + Ga0059261_2319 0.24 +0.0
2,431,772 + Ga0059261_2319 0.24 -0.4
2,431,772 + Ga0059261_2319 0.24 +0.1
2,431,773 - Ga0059261_2319 0.24 +0.1
2,431,773 - Ga0059261_2319 0.24 +0.2
2,431,887 + Ga0059261_2319 0.37 -0.9
2,431,887 + Ga0059261_2319 0.37 +1.8
2,431,887 + Ga0059261_2319 0.37 -0.1
2,431,887 + Ga0059261_2319 0.37 -0.6
2,431,887 + Ga0059261_2319 0.37 -0.1
2,431,887 + Ga0059261_2319 0.37 -1.4
2,431,887 + Ga0059261_2319 0.37 +0.1
2,431,887 + Ga0059261_2319 0.37 +0.1
2,431,888 - Ga0059261_2319 0.38 +0.3
2,431,888 - Ga0059261_2319 0.38 +0.7
2,432,052 + Ga0059261_2319 0.56 -0.4
2,432,052 + Ga0059261_2319 0.56 +0.1
2,432,052 + Ga0059261_2319 0.56 -0.3
2,432,053 - Ga0059261_2319 0.56 +1.2
2,432,053 - -0.9
2,432,053 - Ga0059261_2319 0.56 +1.0
2,432,053 - Ga0059261_2319 0.56 -0.1
2,432,104 - Ga0059261_2319 0.62 -0.1
2,432,205 + Ga0059261_2319 0.74 +0.4
2,432,206 - Ga0059261_2319 0.74 +0.1
2,432,206 - Ga0059261_2319 0.74 -0.0
2,432,206 - Ga0059261_2319 0.74 +0.3
2,432,206 - Ga0059261_2319 0.74 -0.4
2,432,388 + +0.3
2,432,388 + +0.3
2,432,388 + -0.0
2,432,389 - -0.3
2,432,389 - -0.2
2,432,389 - +1.2
2,432,430 + -0.1
2,432,430 + -0.0
2,432,431 - +0.5
2,432,431 - +0.6
2,432,431 - -2.9
2,432,431 - +0.3
2,432,478 + Ga0059261_2320 0.11 +0.0
2,432,478 + Ga0059261_2320 0.11 +0.5
2,432,479 - Ga0059261_2320 0.12 -0.1
2,432,479 - Ga0059261_2320 0.12 +0.3
2,432,496 + Ga0059261_2320 0.16 -0.8
2,432,496 + Ga0059261_2320 0.16 -0.5
2,432,496 + Ga0059261_2320 0.16 -0.1
2,432,497 - Ga0059261_2320 0.16 +0.1
2,432,497 - Ga0059261_2320 0.16 -0.2
2,432,497 - Ga0059261_2320 0.16 +0.5
2,432,497 - Ga0059261_2320 0.16 +0.1
2,432,685 + Ga0059261_2320 0.59 -0.4
2,432,685 + Ga0059261_2320 0.59 +0.2
2,432,685 + Ga0059261_2320 0.59 -1.4
2,432,686 - Ga0059261_2320 0.59 -0.8
2,432,848 + +0.5
2,432,849 - -0.4
2,432,849 - +0.7

Or see this region's nucleotide sequence