Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_30055

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_30050 and AO356_30055 are separated by 75 nucleotidesAO356_30055 and AO356_30060 are separated by 86 nucleotides AO356_30050: AO356_30050 - aminomethyltransferase, at 7,011,468 to 7,013,810 _30050 AO356_30055: AO356_30055 - amino acid permease, at 7,013,886 to 7,015,565 _30055 AO356_30060: AO356_30060 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase, at 7,015,652 to 7,016,584 _30060 Position (kb) 7013 7014 7015 7016Strain fitness (log2 ratio) -1 0 1at 7013.017 kb on - strand, within AO356_30050at 7013.863 kb on + strandat 7013.879 kb on + strandat 7013.879 kb on + strandat 7013.880 kb on - strandat 7013.897 kb on + strandat 7014.099 kb on + strand, within AO356_30055at 7014.100 kb on - strand, within AO356_30055at 7014.100 kb on - strand, within AO356_30055at 7014.264 kb on + strand, within AO356_30055at 7014.265 kb on - strand, within AO356_30055at 7014.397 kb on + strand, within AO356_30055at 7014.428 kb on + strand, within AO356_30055at 7014.678 kb on + strand, within AO356_30055at 7014.678 kb on + strand, within AO356_30055at 7014.845 kb on + strand, within AO356_30055at 7014.845 kb on + strand, within AO356_30055at 7014.955 kb on + strand, within AO356_30055at 7014.955 kb on + strand, within AO356_30055at 7014.956 kb on - strand, within AO356_30055at 7015.059 kb on + strand, within AO356_30055at 7015.149 kb on + strand, within AO356_30055at 7015.182 kb on + strand, within AO356_30055at 7015.182 kb on + strand, within AO356_30055at 7015.182 kb on + strand, within AO356_30055at 7015.183 kb on - strand, within AO356_30055at 7015.258 kb on - strand, within AO356_30055at 7015.461 kb on + strandat 7015.462 kb on - strandat 7015.506 kb on + strandat 7015.507 kb on - strandat 7015.540 kb on - strandat 7015.823 kb on + strand, within AO356_30060at 7015.824 kb on - strand, within AO356_30060at 7015.824 kb on - strand, within AO356_30060at 7015.839 kb on + strand, within AO356_30060at 7015.911 kb on + strand, within AO356_30060at 7016.492 kb on + strandat 7016.492 kb on + strandat 7016.492 kb on + strandat 7016.492 kb on + strandat 7016.493 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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7,013,017 - AO356_30050 0.66 +0.9
7,013,863 + +0.4
7,013,879 + +0.3
7,013,879 + +0.9
7,013,880 - +0.5
7,013,897 + -0.5
7,014,099 + AO356_30055 0.13 -0.1
7,014,100 - AO356_30055 0.13 +0.4
7,014,100 - AO356_30055 0.13 +0.3
7,014,264 + AO356_30055 0.23 -0.5
7,014,265 - AO356_30055 0.23 -0.0
7,014,397 + AO356_30055 0.30 +0.3
7,014,428 + AO356_30055 0.32 +0.6
7,014,678 + AO356_30055 0.47 +1.5
7,014,678 + AO356_30055 0.47 +0.0
7,014,845 + AO356_30055 0.57 +0.5
7,014,845 + AO356_30055 0.57 +0.4
7,014,955 + AO356_30055 0.64 -0.7
7,014,955 + AO356_30055 0.64 -0.6
7,014,956 - AO356_30055 0.64 +0.8
7,015,059 + AO356_30055 0.70 -0.1
7,015,149 + AO356_30055 0.75 +0.3
7,015,182 + AO356_30055 0.77 -0.3
7,015,182 + AO356_30055 0.77 -0.2
7,015,182 + AO356_30055 0.77 -0.3
7,015,183 - AO356_30055 0.77 -0.9
7,015,258 - AO356_30055 0.82 -1.0
7,015,461 + -0.4
7,015,462 - +0.5
7,015,506 + -0.4
7,015,507 - +1.2
7,015,540 - +0.2
7,015,823 + AO356_30060 0.18 +1.4
7,015,824 - AO356_30060 0.18 +0.4
7,015,824 - AO356_30060 0.18 -0.0
7,015,839 + AO356_30060 0.20 +1.2
7,015,911 + AO356_30060 0.28 +0.5
7,016,492 + +0.5
7,016,492 + -0.5
7,016,492 + +0.4
7,016,492 + +0.2
7,016,493 - +0.1

Or see this region's nucleotide sequence