Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30050 and AO356_30055 are separated by 75 nucleotides AO356_30055 and AO356_30060 are separated by 86 nucleotides
AO356_30050: AO356_30050 - aminomethyltransferase, at 7,011,468 to 7,013,810
_30050
AO356_30055: AO356_30055 - amino acid permease, at 7,013,886 to 7,015,565
_30055
AO356_30060: AO356_30060 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase, at 7,015,652 to 7,016,584
_30060
Position (kb)
7013
7014
7015
7016 Strain fitness (log2 ratio)
-1
0
1 at 7013.017 kb on - strand, within AO356_30050 at 7013.863 kb on + strand at 7013.879 kb on + strand at 7013.879 kb on + strand at 7013.880 kb on - strand at 7013.897 kb on + strand at 7014.099 kb on + strand, within AO356_30055 at 7014.100 kb on - strand, within AO356_30055 at 7014.100 kb on - strand, within AO356_30055 at 7014.264 kb on + strand, within AO356_30055 at 7014.265 kb on - strand, within AO356_30055 at 7014.397 kb on + strand, within AO356_30055 at 7014.428 kb on + strand, within AO356_30055 at 7014.678 kb on + strand, within AO356_30055 at 7014.678 kb on + strand, within AO356_30055 at 7014.845 kb on + strand, within AO356_30055 at 7014.845 kb on + strand, within AO356_30055 at 7014.955 kb on + strand, within AO356_30055 at 7014.955 kb on + strand, within AO356_30055 at 7014.956 kb on - strand, within AO356_30055 at 7015.059 kb on + strand, within AO356_30055 at 7015.149 kb on + strand, within AO356_30055 at 7015.182 kb on + strand, within AO356_30055 at 7015.182 kb on + strand, within AO356_30055 at 7015.182 kb on + strand, within AO356_30055 at 7015.183 kb on - strand, within AO356_30055 at 7015.258 kb on - strand, within AO356_30055 at 7015.461 kb on + strand at 7015.462 kb on - strand at 7015.506 kb on + strand at 7015.507 kb on - strand at 7015.540 kb on - strand at 7015.823 kb on + strand, within AO356_30060 at 7015.824 kb on - strand, within AO356_30060 at 7015.824 kb on - strand, within AO356_30060 at 7015.839 kb on + strand, within AO356_30060 at 7015.911 kb on + strand, within AO356_30060 at 7016.492 kb on + strand at 7016.492 kb on + strand at 7016.492 kb on + strand at 7016.492 kb on + strand at 7016.493 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 7,013,017 - AO356_30050 0.66 +0.9 7,013,863 + +0.4 7,013,879 + +0.3 7,013,879 + +0.9 7,013,880 - +0.5 7,013,897 + -0.5 7,014,099 + AO356_30055 0.13 -0.1 7,014,100 - AO356_30055 0.13 +0.4 7,014,100 - AO356_30055 0.13 +0.3 7,014,264 + AO356_30055 0.23 -0.5 7,014,265 - AO356_30055 0.23 -0.0 7,014,397 + AO356_30055 0.30 +0.3 7,014,428 + AO356_30055 0.32 +0.6 7,014,678 + AO356_30055 0.47 +1.5 7,014,678 + AO356_30055 0.47 +0.0 7,014,845 + AO356_30055 0.57 +0.5 7,014,845 + AO356_30055 0.57 +0.4 7,014,955 + AO356_30055 0.64 -0.7 7,014,955 + AO356_30055 0.64 -0.6 7,014,956 - AO356_30055 0.64 +0.8 7,015,059 + AO356_30055 0.70 -0.1 7,015,149 + AO356_30055 0.75 +0.3 7,015,182 + AO356_30055 0.77 -0.3 7,015,182 + AO356_30055 0.77 -0.2 7,015,182 + AO356_30055 0.77 -0.3 7,015,183 - AO356_30055 0.77 -0.9 7,015,258 - AO356_30055 0.82 -1.0 7,015,461 + -0.4 7,015,462 - +0.5 7,015,506 + -0.4 7,015,507 - +1.2 7,015,540 - +0.2 7,015,823 + AO356_30060 0.18 +1.4 7,015,824 - AO356_30060 0.18 +0.4 7,015,824 - AO356_30060 0.18 -0.0 7,015,839 + AO356_30060 0.20 +1.2 7,015,911 + AO356_30060 0.28 +0.5 7,016,492 + +0.5 7,016,492 + -0.5 7,016,492 + +0.4 7,016,492 + +0.2 7,016,493 - +0.1
Or see this region's nucleotide sequence