Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21920 and AO356_21925 are separated by 86 nucleotides AO356_21925 and AO356_21930 are separated by 292 nucleotides
AO356_21920: AO356_21920 - AraC family transcriptional regulator, at 4,905,510 to 4,906,553
_21920
AO356_21925: AO356_21925 - hypothetical protein, at 4,906,640 to 4,907,053
_21925
AO356_21930: AO356_21930 - hypothetical protein, at 4,907,346 to 4,908,548
_21930
Position (kb)
4906
4907
4908 Strain fitness (log2 ratio)
-1
0
1 at 4905.696 kb on + strand, within AO356_21920 at 4905.696 kb on + strand, within AO356_21920 at 4906.029 kb on + strand, within AO356_21920 at 4906.029 kb on + strand, within AO356_21920 at 4906.029 kb on + strand, within AO356_21920 at 4906.029 kb on + strand, within AO356_21920 at 4906.029 kb on + strand, within AO356_21920 at 4906.029 kb on + strand, within AO356_21920 at 4906.029 kb on + strand, within AO356_21920 at 4906.029 kb on + strand, within AO356_21920 at 4906.030 kb on - strand, within AO356_21920 at 4906.030 kb on - strand, within AO356_21920 at 4906.030 kb on - strand, within AO356_21920 at 4906.030 kb on - strand, within AO356_21920 at 4906.261 kb on + strand, within AO356_21920 at 4906.261 kb on + strand, within AO356_21920 at 4906.261 kb on + strand, within AO356_21920 at 4906.261 kb on + strand, within AO356_21920 at 4906.262 kb on - strand, within AO356_21920 at 4906.365 kb on + strand, within AO356_21920 at 4906.368 kb on + strand, within AO356_21920 at 4906.368 kb on + strand, within AO356_21920 at 4906.369 kb on - strand, within AO356_21920 at 4906.515 kb on + strand at 4906.515 kb on + strand at 4906.516 kb on - strand at 4906.516 kb on - strand at 4906.739 kb on + strand, within AO356_21925 at 4906.740 kb on - strand, within AO356_21925 at 4906.740 kb on - strand, within AO356_21925 at 4906.821 kb on + strand, within AO356_21925 at 4906.821 kb on + strand, within AO356_21925 at 4906.821 kb on + strand, within AO356_21925 at 4906.821 kb on + strand, within AO356_21925 at 4906.821 kb on + strand, within AO356_21925 at 4906.822 kb on - strand, within AO356_21925 at 4906.822 kb on - strand, within AO356_21925 at 4906.822 kb on - strand, within AO356_21925 at 4906.822 kb on - strand, within AO356_21925 at 4906.822 kb on - strand, within AO356_21925 at 4906.822 kb on - strand, within AO356_21925 at 4906.822 kb on - strand, within AO356_21925 at 4906.838 kb on + strand, within AO356_21925 at 4906.839 kb on - strand, within AO356_21925 at 4906.839 kb on - strand, within AO356_21925 at 4906.839 kb on - strand, within AO356_21925 at 4906.875 kb on + strand, within AO356_21925 at 4906.876 kb on - strand, within AO356_21925 at 4906.876 kb on - strand, within AO356_21925 at 4906.887 kb on + strand, within AO356_21925 at 4906.887 kb on + strand, within AO356_21925 at 4906.887 kb on + strand, within AO356_21925 at 4906.953 kb on + strand, within AO356_21925 at 4906.953 kb on + strand, within AO356_21925 at 4906.953 kb on + strand, within AO356_21925 at 4906.975 kb on - strand, within AO356_21925 at 4906.980 kb on + strand, within AO356_21925 at 4906.980 kb on + strand, within AO356_21925 at 4906.980 kb on + strand, within AO356_21925 at 4906.981 kb on - strand, within AO356_21925 at 4906.981 kb on - strand, within AO356_21925 at 4907.028 kb on - strand at 4907.039 kb on + strand at 4907.040 kb on - strand at 4907.040 kb on - strand at 4907.069 kb on + strand at 4907.085 kb on - strand at 4907.192 kb on - strand at 4907.193 kb on + strand at 4907.276 kb on - strand at 4907.480 kb on - strand, within AO356_21930 at 4907.480 kb on - strand, within AO356_21930 at 4907.750 kb on - strand, within AO356_21930 at 4907.750 kb on - strand, within AO356_21930 at 4907.750 kb on - strand, within AO356_21930 at 4907.750 kb on - strand, within AO356_21930 at 4907.782 kb on + strand, within AO356_21930 at 4907.782 kb on + strand, within AO356_21930 at 4907.782 kb on + strand, within AO356_21930 at 4907.782 kb on + strand, within AO356_21930 at 4907.782 kb on + strand, within AO356_21930 at 4907.782 kb on + strand, within AO356_21930 at 4907.782 kb on + strand, within AO356_21930 at 4907.783 kb on - strand, within AO356_21930 at 4907.783 kb on - strand, within AO356_21930 at 4907.783 kb on - strand, within AO356_21930 at 4907.839 kb on + strand, within AO356_21930 at 4907.840 kb on - strand, within AO356_21930 at 4907.840 kb on - strand, within AO356_21930 at 4907.952 kb on + strand, within AO356_21930 at 4907.953 kb on - strand, within AO356_21930 at 4907.953 kb on - strand, within AO356_21930
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 4,905,696 + AO356_21920 0.18 +0.5 4,905,696 + AO356_21920 0.18 +0.2 4,906,029 + AO356_21920 0.50 +0.3 4,906,029 + AO356_21920 0.50 -0.4 4,906,029 + AO356_21920 0.50 +0.5 4,906,029 + AO356_21920 0.50 +0.6 4,906,029 + AO356_21920 0.50 +0.3 4,906,029 + AO356_21920 0.50 +0.3 4,906,029 + AO356_21920 0.50 -0.6 4,906,029 + AO356_21920 0.50 -0.2 4,906,030 - AO356_21920 0.50 +0.6 4,906,030 - AO356_21920 0.50 +0.8 4,906,030 - AO356_21920 0.50 -0.4 4,906,030 - AO356_21920 0.50 +1.2 4,906,261 + AO356_21920 0.72 -0.1 4,906,261 + AO356_21920 0.72 +0.5 4,906,261 + AO356_21920 0.72 +0.6 4,906,261 + AO356_21920 0.72 -0.0 4,906,262 - AO356_21920 0.72 +0.4 4,906,365 + AO356_21920 0.82 -0.4 4,906,368 + AO356_21920 0.82 +0.7 4,906,368 + AO356_21920 0.82 +0.9 4,906,369 - AO356_21920 0.82 +0.8 4,906,515 + +0.4 4,906,515 + -0.1 4,906,516 - +0.5 4,906,516 - +1.5 4,906,739 + AO356_21925 0.24 -0.2 4,906,740 - AO356_21925 0.24 -1.0 4,906,740 - AO356_21925 0.24 +0.2 4,906,821 + AO356_21925 0.44 -0.7 4,906,821 + AO356_21925 0.44 -0.4 4,906,821 + AO356_21925 0.44 -0.4 4,906,821 + AO356_21925 0.44 -0.8 4,906,821 + AO356_21925 0.44 -0.0 4,906,822 - AO356_21925 0.44 -0.0 4,906,822 - AO356_21925 0.44 -0.6 4,906,822 - AO356_21925 0.44 -0.3 4,906,822 - AO356_21925 0.44 +0.4 4,906,822 - AO356_21925 0.44 +0.9 4,906,822 - AO356_21925 0.44 -0.2 4,906,822 - AO356_21925 0.44 -1.2 4,906,838 + AO356_21925 0.48 -0.3 4,906,839 - AO356_21925 0.48 -0.9 4,906,839 - AO356_21925 0.48 +0.2 4,906,839 - AO356_21925 0.48 -1.1 4,906,875 + AO356_21925 0.57 -0.1 4,906,876 - AO356_21925 0.57 +0.1 4,906,876 - AO356_21925 0.57 -0.8 4,906,887 + AO356_21925 0.60 -0.1 4,906,887 + AO356_21925 0.60 -0.9 4,906,887 + AO356_21925 0.60 +0.2 4,906,953 + AO356_21925 0.76 -1.2 4,906,953 + AO356_21925 0.76 +0.9 4,906,953 + AO356_21925 0.76 -0.1 4,906,975 - AO356_21925 0.81 +1.2 4,906,980 + AO356_21925 0.82 -1.3 4,906,980 + AO356_21925 0.82 +0.0 4,906,980 + AO356_21925 0.82 +0.2 4,906,981 - AO356_21925 0.82 +0.2 4,906,981 - AO356_21925 0.82 +0.1 4,907,028 - -0.9 4,907,039 + -1.2 4,907,040 - -1.5 4,907,040 - +1.0 4,907,069 + +0.9 4,907,085 - -0.1 4,907,192 - +0.3 4,907,193 + +0.6 4,907,276 - +1.2 4,907,480 - AO356_21930 0.11 -0.6 4,907,480 - AO356_21930 0.11 +1.6 4,907,750 - AO356_21930 0.34 -0.2 4,907,750 - AO356_21930 0.34 +0.9 4,907,750 - AO356_21930 0.34 +0.8 4,907,750 - AO356_21930 0.34 -0.2 4,907,782 + AO356_21930 0.36 +0.7 4,907,782 + AO356_21930 0.36 -0.8 4,907,782 + AO356_21930 0.36 +0.8 4,907,782 + AO356_21930 0.36 +0.8 4,907,782 + AO356_21930 0.36 -0.2 4,907,782 + AO356_21930 0.36 -0.1 4,907,782 + AO356_21930 0.36 -0.4 4,907,783 - AO356_21930 0.36 +0.4 4,907,783 - AO356_21930 0.36 +0.9 4,907,783 - AO356_21930 0.36 -0.5 4,907,839 + AO356_21930 0.41 +0.3 4,907,840 - AO356_21930 0.41 +0.3 4,907,840 - AO356_21930 0.41 +0.6 4,907,952 + AO356_21930 0.50 +0.4 4,907,953 - AO356_21930 0.50 +0.2 4,907,953 - AO356_21930 0.50 +0.5
Or see this region's nucleotide sequence