Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09705 and AO356_09710 are separated by 120 nucleotides AO356_09710 and AO356_09715 are separated by 190 nucleotides AO356_09715 and AO356_09720 overlap by 4 nucleotides
AO356_09705: AO356_09705 - glutamine synthetase, at 2,203,667 to 2,205,073
_09705
AO356_09710: AO356_09710 - chorismate mutase, at 2,205,194 to 2,205,757
_09710
AO356_09715: AO356_09715 - hypothetical protein, at 2,205,948 to 2,206,466
_09715
AO356_09720: AO356_09720 - penicillin-binding protein, at 2,206,463 to 2,207,086
_09720
Position (kb)
2205
2206 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2205.104 kb on + strand at 2205.104 kb on + strand at 2205.148 kb on + strand at 2205.148 kb on + strand at 2205.176 kb on + strand at 2205.176 kb on + strand at 2205.176 kb on + strand at 2205.177 kb on - strand at 2205.177 kb on - strand at 2205.346 kb on + strand, within AO356_09710 at 2205.346 kb on + strand, within AO356_09710 at 2205.346 kb on + strand, within AO356_09710 at 2205.347 kb on - strand, within AO356_09710 at 2205.347 kb on - strand, within AO356_09710 at 2205.347 kb on - strand, within AO356_09710 at 2205.347 kb on - strand, within AO356_09710 at 2205.347 kb on - strand, within AO356_09710 at 2205.428 kb on + strand, within AO356_09710 at 2205.428 kb on + strand, within AO356_09710 at 2205.474 kb on + strand, within AO356_09710 at 2205.474 kb on + strand, within AO356_09710 at 2205.474 kb on + strand, within AO356_09710 at 2205.474 kb on + strand, within AO356_09710 at 2205.474 kb on + strand, within AO356_09710 at 2205.474 kb on + strand, within AO356_09710 at 2205.474 kb on + strand, within AO356_09710 at 2205.475 kb on - strand, within AO356_09710 at 2205.475 kb on - strand, within AO356_09710 at 2205.475 kb on - strand, within AO356_09710 at 2205.475 kb on - strand, within AO356_09710 at 2205.475 kb on - strand, within AO356_09710 at 2205.497 kb on + strand, within AO356_09710 at 2205.497 kb on + strand, within AO356_09710 at 2205.497 kb on + strand, within AO356_09710 at 2205.497 kb on + strand, within AO356_09710 at 2205.497 kb on + strand, within AO356_09710 at 2205.497 kb on + strand, within AO356_09710 at 2205.497 kb on + strand, within AO356_09710 at 2205.497 kb on + strand, within AO356_09710 at 2205.498 kb on - strand, within AO356_09710 at 2205.498 kb on - strand, within AO356_09710 at 2205.498 kb on - strand, within AO356_09710 at 2205.498 kb on - strand, within AO356_09710 at 2205.498 kb on - strand, within AO356_09710 at 2205.498 kb on - strand, within AO356_09710 at 2205.498 kb on - strand, within AO356_09710 at 2205.739 kb on + strand at 2205.739 kb on + strand at 2205.739 kb on + strand at 2205.739 kb on + strand at 2205.739 kb on + strand at 2205.740 kb on - strand at 2205.740 kb on - strand at 2205.740 kb on - strand at 2205.740 kb on - strand at 2205.740 kb on - strand at 2205.740 kb on - strand at 2205.909 kb on + strand at 2205.909 kb on + strand at 2205.909 kb on + strand at 2205.909 kb on + strand at 2205.909 kb on + strand at 2205.909 kb on + strand at 2205.909 kb on + strand at 2205.909 kb on + strand at 2205.909 kb on + strand at 2205.909 kb on + strand at 2205.909 kb on + strand at 2205.910 kb on - strand at 2205.910 kb on - strand at 2205.910 kb on - strand at 2205.947 kb on + strand at 2205.948 kb on - strand at 2206.011 kb on + strand, within AO356_09715 at 2206.011 kb on + strand, within AO356_09715 at 2206.011 kb on + strand, within AO356_09715 at 2206.011 kb on + strand, within AO356_09715 at 2206.011 kb on + strand, within AO356_09715 at 2206.012 kb on - strand, within AO356_09715 at 2206.012 kb on - strand, within AO356_09715 at 2206.012 kb on - strand, within AO356_09715 at 2206.012 kb on - strand, within AO356_09715 at 2206.012 kb on - strand, within AO356_09715 at 2206.012 kb on - strand, within AO356_09715 at 2206.012 kb on - strand, within AO356_09715 at 2206.017 kb on + strand, within AO356_09715 at 2206.017 kb on + strand, within AO356_09715 at 2206.017 kb on + strand, within AO356_09715 at 2206.017 kb on + strand, within AO356_09715 at 2206.017 kb on + strand, within AO356_09715 at 2206.017 kb on + strand, within AO356_09715 at 2206.017 kb on + strand, within AO356_09715 at 2206.017 kb on + strand, within AO356_09715 at 2206.017 kb on + strand, within AO356_09715 at 2206.017 kb on + strand, within AO356_09715 at 2206.018 kb on - strand, within AO356_09715 at 2206.018 kb on - strand, within AO356_09715 at 2206.018 kb on - strand, within AO356_09715 at 2206.018 kb on - strand, within AO356_09715 at 2206.018 kb on - strand, within AO356_09715 at 2206.018 kb on - strand, within AO356_09715 at 2206.018 kb on - strand, within AO356_09715 at 2206.018 kb on - strand, within AO356_09715 at 2206.045 kb on - strand, within AO356_09715 at 2206.179 kb on + strand, within AO356_09715 at 2206.180 kb on - strand, within AO356_09715 at 2206.255 kb on + strand, within AO356_09715 at 2206.256 kb on - strand, within AO356_09715 at 2206.256 kb on - strand, within AO356_09715 at 2206.526 kb on + strand, within AO356_09720 at 2206.526 kb on + strand, within AO356_09720 at 2206.526 kb on + strand, within AO356_09720 at 2206.526 kb on + strand, within AO356_09720 at 2206.527 kb on - strand, within AO356_09720 at 2206.527 kb on - strand, within AO356_09720 at 2206.527 kb on - strand, within AO356_09720 at 2206.527 kb on - strand, within AO356_09720 at 2206.527 kb on - strand, within AO356_09720 at 2206.527 kb on - strand, within AO356_09720 at 2206.527 kb on - strand, within AO356_09720 at 2206.528 kb on + strand, within AO356_09720 at 2206.528 kb on + strand, within AO356_09720 at 2206.528 kb on + strand, within AO356_09720 at 2206.528 kb on + strand, within AO356_09720 at 2206.528 kb on + strand, within AO356_09720 at 2206.528 kb on + strand, within AO356_09720 at 2206.528 kb on + strand, within AO356_09720 at 2206.528 kb on + strand, within AO356_09720 at 2206.528 kb on + strand, within AO356_09720 at 2206.529 kb on - strand, within AO356_09720 at 2206.529 kb on - strand, within AO356_09720 at 2206.529 kb on - strand, within AO356_09720 at 2206.529 kb on - strand, within AO356_09720 at 2206.529 kb on - strand, within AO356_09720 at 2206.529 kb on - strand, within AO356_09720 at 2206.529 kb on - strand, within AO356_09720 at 2206.529 kb on - strand, within AO356_09720 at 2206.529 kb on - strand, within AO356_09720 at 2206.529 kb on - strand, within AO356_09720 at 2206.532 kb on + strand, within AO356_09720 at 2206.532 kb on + strand, within AO356_09720 at 2206.532 kb on + strand, within AO356_09720 at 2206.532 kb on + strand, within AO356_09720 at 2206.532 kb on + strand, within AO356_09720 at 2206.532 kb on + strand, within AO356_09720 at 2206.533 kb on - strand, within AO356_09720 at 2206.533 kb on - strand, within AO356_09720 at 2206.533 kb on - strand, within AO356_09720 at 2206.533 kb on - strand, within AO356_09720 at 2206.533 kb on - strand, within AO356_09720 at 2206.533 kb on - strand, within AO356_09720 at 2206.533 kb on - strand, within AO356_09720 at 2206.533 kb on - strand, within AO356_09720 at 2206.533 kb on - strand, within AO356_09720 at 2206.557 kb on + strand, within AO356_09720 at 2206.557 kb on + strand, within AO356_09720 at 2206.557 kb on + strand, within AO356_09720 at 2206.558 kb on - strand, within AO356_09720 at 2206.558 kb on - strand, within AO356_09720 at 2206.558 kb on - strand, within AO356_09720 at 2206.688 kb on + strand, within AO356_09720 at 2206.732 kb on - strand, within AO356_09720
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 2,205,104 + +0.0 2,205,104 + +0.1 2,205,148 + -0.2 2,205,148 + +0.2 2,205,176 + +0.4 2,205,176 + +1.2 2,205,176 + +1.7 2,205,177 - +0.3 2,205,177 - -0.0 2,205,346 + AO356_09710 0.27 -1.0 2,205,346 + AO356_09710 0.27 +0.7 2,205,346 + AO356_09710 0.27 -0.0 2,205,347 - AO356_09710 0.27 +0.5 2,205,347 - AO356_09710 0.27 -0.1 2,205,347 - AO356_09710 0.27 -0.4 2,205,347 - AO356_09710 0.27 -0.2 2,205,347 - AO356_09710 0.27 +0.3 2,205,428 + AO356_09710 0.41 +1.5 2,205,428 + AO356_09710 0.41 -0.0 2,205,474 + AO356_09710 0.50 +0.1 2,205,474 + AO356_09710 0.50 +0.4 2,205,474 + AO356_09710 0.50 +0.1 2,205,474 + AO356_09710 0.50 +0.5 2,205,474 + AO356_09710 0.50 +0.6 2,205,474 + AO356_09710 0.50 -0.0 2,205,474 + AO356_09710 0.50 -0.7 2,205,475 - AO356_09710 0.50 +0.1 2,205,475 - AO356_09710 0.50 +0.3 2,205,475 - AO356_09710 0.50 -0.2 2,205,475 - AO356_09710 0.50 -0.4 2,205,475 - AO356_09710 0.50 -0.3 2,205,497 + AO356_09710 0.54 +0.3 2,205,497 + AO356_09710 0.54 +0.7 2,205,497 + AO356_09710 0.54 +0.4 2,205,497 + AO356_09710 0.54 +0.9 2,205,497 + AO356_09710 0.54 +0.4 2,205,497 + AO356_09710 0.54 +0.5 2,205,497 + AO356_09710 0.54 -0.8 2,205,497 + AO356_09710 0.54 +0.6 2,205,498 - AO356_09710 0.54 +0.4 2,205,498 - AO356_09710 0.54 -0.2 2,205,498 - AO356_09710 0.54 +0.3 2,205,498 - AO356_09710 0.54 -0.2 2,205,498 - AO356_09710 0.54 +0.3 2,205,498 - AO356_09710 0.54 -1.3 2,205,498 - AO356_09710 0.54 -0.2 2,205,739 + +0.8 2,205,739 + +0.4 2,205,739 + -0.2 2,205,739 + +1.5 2,205,739 + +0.9 2,205,740 - +0.3 2,205,740 - -0.7 2,205,740 - -0.1 2,205,740 - -0.4 2,205,740 - -0.1 2,205,740 - +0.9 2,205,909 + +0.6 2,205,909 + -1.4 2,205,909 + -0.0 2,205,909 + +0.7 2,205,909 + +0.2 2,205,909 + -0.2 2,205,909 + +0.5 2,205,909 + +0.3 2,205,909 + +0.2 2,205,909 + +0.0 2,205,909 + +0.3 2,205,910 - +0.6 2,205,910 - +0.4 2,205,910 - +0.2 2,205,947 + -0.8 2,205,948 - -1.2 2,206,011 + AO356_09715 0.12 -1.0 2,206,011 + AO356_09715 0.12 +0.0 2,206,011 + AO356_09715 0.12 +0.4 2,206,011 + AO356_09715 0.12 +1.1 2,206,011 + AO356_09715 0.12 +0.3 2,206,012 - AO356_09715 0.12 +0.0 2,206,012 - AO356_09715 0.12 -0.2 2,206,012 - AO356_09715 0.12 +0.3 2,206,012 - AO356_09715 0.12 +0.5 2,206,012 - AO356_09715 0.12 -2.2 2,206,012 - AO356_09715 0.12 +0.5 2,206,012 - AO356_09715 0.12 +0.3 2,206,017 + AO356_09715 0.13 -0.4 2,206,017 + AO356_09715 0.13 +0.6 2,206,017 + AO356_09715 0.13 -0.8 2,206,017 + AO356_09715 0.13 +0.2 2,206,017 + AO356_09715 0.13 +1.1 2,206,017 + AO356_09715 0.13 +0.5 2,206,017 + AO356_09715 0.13 -2.2 2,206,017 + AO356_09715 0.13 +0.5 2,206,017 + AO356_09715 0.13 +0.4 2,206,017 + AO356_09715 0.13 +1.2 2,206,018 - AO356_09715 0.13 +0.2 2,206,018 - AO356_09715 0.13 -0.5 2,206,018 - AO356_09715 0.13 +0.6 2,206,018 - AO356_09715 0.13 -0.8 2,206,018 - AO356_09715 0.13 -0.4 2,206,018 - AO356_09715 0.13 -1.2 2,206,018 - AO356_09715 0.13 +0.9 2,206,018 - AO356_09715 0.13 +1.1 2,206,045 - AO356_09715 0.19 -0.3 2,206,179 + AO356_09715 0.45 +0.1 2,206,180 - AO356_09715 0.45 +0.1 2,206,255 + AO356_09715 0.59 -0.2 2,206,256 - AO356_09715 0.59 -0.4 2,206,256 - AO356_09715 0.59 +0.5 2,206,526 + AO356_09720 0.10 -0.7 2,206,526 + AO356_09720 0.10 +0.6 2,206,526 + AO356_09720 0.10 -0.3 2,206,526 + AO356_09720 0.10 +0.3 2,206,527 - AO356_09720 0.10 -0.1 2,206,527 - AO356_09720 0.10 +0.2 2,206,527 - AO356_09720 0.10 +0.4 2,206,527 - AO356_09720 0.10 -0.8 2,206,527 - AO356_09720 0.10 -0.7 2,206,527 - AO356_09720 0.10 +0.5 2,206,527 - AO356_09720 0.10 +0.3 2,206,528 + AO356_09720 0.10 -0.3 2,206,528 + AO356_09720 0.10 -2.6 2,206,528 + AO356_09720 0.10 -0.1 2,206,528 + AO356_09720 0.10 +1.3 2,206,528 + AO356_09720 0.10 +0.0 2,206,528 + AO356_09720 0.10 -0.2 2,206,528 + AO356_09720 0.10 +0.8 2,206,528 + AO356_09720 0.10 -0.8 2,206,528 + AO356_09720 0.10 -1.2 2,206,529 - AO356_09720 0.11 -0.7 2,206,529 - AO356_09720 0.11 -0.0 2,206,529 - AO356_09720 0.11 +0.6 2,206,529 - AO356_09720 0.11 -0.0 2,206,529 - AO356_09720 0.11 -0.4 2,206,529 - AO356_09720 0.11 +0.2 2,206,529 - AO356_09720 0.11 +0.7 2,206,529 - AO356_09720 0.11 +0.2 2,206,529 - AO356_09720 0.11 -0.6 2,206,529 - AO356_09720 0.11 +0.6 2,206,532 + AO356_09720 0.11 -0.2 2,206,532 + AO356_09720 0.11 +0.7 2,206,532 + AO356_09720 0.11 -0.3 2,206,532 + AO356_09720 0.11 -0.1 2,206,532 + AO356_09720 0.11 -0.4 2,206,532 + AO356_09720 0.11 +0.4 2,206,533 - AO356_09720 0.11 -0.1 2,206,533 - AO356_09720 0.11 +0.0 2,206,533 - AO356_09720 0.11 +0.9 2,206,533 - AO356_09720 0.11 -0.2 2,206,533 - AO356_09720 0.11 +1.0 2,206,533 - AO356_09720 0.11 +0.1 2,206,533 - AO356_09720 0.11 -0.1 2,206,533 - AO356_09720 0.11 +1.0 2,206,533 - AO356_09720 0.11 +0.6 2,206,557 + AO356_09720 0.15 +0.5 2,206,557 + AO356_09720 0.15 +0.4 2,206,557 + AO356_09720 0.15 +0.9 2,206,558 - AO356_09720 0.15 +0.6 2,206,558 - AO356_09720 0.15 +2.2 2,206,558 - AO356_09720 0.15 -0.4 2,206,688 + AO356_09720 0.36 +0.8 2,206,732 - AO356_09720 0.43 +1.0
Or see this region's nucleotide sequence