Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28100

Experiment: LB 10C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28095 and AO353_28100 are separated by 19 nucleotidesAO353_28100 and AO353_28105 overlap by 4 nucleotides AO353_28095: AO353_28095 - RND transporter, at 6,124,845 to 6,126,335 _28095 AO353_28100: AO353_28100 - MFS transporter, at 6,126,355 to 6,127,854 _28100 AO353_28105: AO353_28105 - hemolysin D, at 6,127,851 to 6,128,990 _28105 Position (kb) 6126 6127 6128Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6125.415 kb on + strand, within AO353_28095at 6125.416 kb on - strand, within AO353_28095at 6125.416 kb on - strand, within AO353_28095at 6125.416 kb on - strand, within AO353_28095at 6125.782 kb on + strand, within AO353_28095at 6125.783 kb on - strand, within AO353_28095at 6125.903 kb on + strand, within AO353_28095at 6125.903 kb on + strand, within AO353_28095at 6125.904 kb on - strand, within AO353_28095at 6126.069 kb on + strand, within AO353_28095at 6126.069 kb on + strand, within AO353_28095at 6126.069 kb on + strand, within AO353_28095at 6126.069 kb on + strand, within AO353_28095at 6126.070 kb on - strand, within AO353_28095at 6126.070 kb on - strand, within AO353_28095at 6126.070 kb on - strand, within AO353_28095at 6126.070 kb on - strand, within AO353_28095at 6126.070 kb on - strand, within AO353_28095at 6126.070 kb on - strand, within AO353_28095at 6126.199 kb on + strandat 6126.199 kb on + strandat 6126.200 kb on - strandat 6126.200 kb on - strandat 6126.200 kb on - strandat 6126.200 kb on - strandat 6126.230 kb on + strandat 6126.230 kb on + strandat 6126.230 kb on + strandat 6126.230 kb on + strandat 6126.230 kb on + strandat 6126.230 kb on + strandat 6126.230 kb on + strandat 6126.230 kb on + strandat 6126.231 kb on - strandat 6126.231 kb on - strandat 6126.233 kb on - strandat 6126.233 kb on - strandat 6126.249 kb on - strandat 6126.315 kb on + strandat 6126.323 kb on + strandat 6126.324 kb on - strandat 6126.356 kb on + strandat 6126.356 kb on + strandat 6126.357 kb on - strandat 6126.357 kb on - strandat 6126.357 kb on - strandat 6126.357 kb on - strandat 6126.357 kb on - strandat 6126.633 kb on - strand, within AO353_28100at 6126.633 kb on - strand, within AO353_28100at 6126.705 kb on + strand, within AO353_28100at 6126.862 kb on - strand, within AO353_28100at 6127.115 kb on + strand, within AO353_28100at 6127.308 kb on + strand, within AO353_28100at 6127.309 kb on - strand, within AO353_28100at 6127.356 kb on - strand, within AO353_28100at 6127.605 kb on - strand, within AO353_28100at 6127.676 kb on + strand, within AO353_28100at 6127.676 kb on + strand, within AO353_28100at 6127.676 kb on + strand, within AO353_28100at 6127.676 kb on + strand, within AO353_28100at 6127.676 kb on + strand, within AO353_28100at 6127.676 kb on + strand, within AO353_28100at 6127.677 kb on - strand, within AO353_28100at 6127.677 kb on - strand, within AO353_28100at 6127.687 kb on + strand, within AO353_28100at 6127.732 kb on - strandat 6127.732 kb on - strandat 6127.776 kb on + strandat 6127.776 kb on + strandat 6127.776 kb on + strandat 6127.777 kb on - strandat 6127.777 kb on - strandat 6127.777 kb on - strandat 6127.778 kb on + strandat 6127.778 kb on + strandat 6127.778 kb on + strandat 6127.778 kb on + strandat 6127.778 kb on + strandat 6127.778 kb on + strandat 6127.778 kb on + strandat 6127.778 kb on + strandat 6127.778 kb on + strandat 6127.778 kb on + strandat 6127.779 kb on - strandat 6127.779 kb on - strandat 6127.779 kb on - strandat 6127.779 kb on - strandat 6127.779 kb on - strandat 6127.779 kb on - strandat 6128.078 kb on + strand, within AO353_28105at 6128.078 kb on + strand, within AO353_28105at 6128.100 kb on + strand, within AO353_28105at 6128.100 kb on + strand, within AO353_28105at 6128.100 kb on + strandat 6128.100 kb on + strand, within AO353_28105at 6128.100 kb on + strand, within AO353_28105at 6128.100 kb on + strand, within AO353_28105at 6128.100 kb on + strand, within AO353_28105at 6128.100 kb on + strand, within AO353_28105at 6128.100 kb on + strand, within AO353_28105at 6128.100 kb on + strand, within AO353_28105at 6128.100 kb on + strand, within AO353_28105at 6128.101 kb on - strand, within AO353_28105at 6128.101 kb on - strand, within AO353_28105at 6128.101 kb on - strand, within AO353_28105at 6128.101 kb on - strand, within AO353_28105at 6128.101 kb on - strand, within AO353_28105at 6128.101 kb on - strand, within AO353_28105at 6128.101 kb on - strand, within AO353_28105at 6128.113 kb on + strand, within AO353_28105at 6128.113 kb on + strand, within AO353_28105at 6128.113 kb on + strand, within AO353_28105at 6128.114 kb on - strand, within AO353_28105at 6128.114 kb on - strand, within AO353_28105at 6128.114 kb on - strand, within AO353_28105at 6128.117 kb on + strand, within AO353_28105at 6128.117 kb on + strand, within AO353_28105at 6128.118 kb on - strand, within AO353_28105at 6128.118 kb on - strand, within AO353_28105at 6128.118 kb on - strand, within AO353_28105at 6128.153 kb on + strand, within AO353_28105at 6128.154 kb on - strand, within AO353_28105at 6128.154 kb on - strand, within AO353_28105at 6128.242 kb on + strand, within AO353_28105at 6128.242 kb on + strand, within AO353_28105at 6128.242 kb on + strandat 6128.242 kb on + strand, within AO353_28105at 6128.242 kb on + strand, within AO353_28105at 6128.242 kb on + strand, within AO353_28105at 6128.242 kb on + strand, within AO353_28105at 6128.242 kb on + strand, within AO353_28105at 6128.296 kb on + strand, within AO353_28105at 6128.296 kb on + strand, within AO353_28105at 6128.296 kb on + strand, within AO353_28105at 6128.296 kb on + strand, within AO353_28105at 6128.296 kb on + strand, within AO353_28105at 6128.296 kb on + strand, within AO353_28105at 6128.296 kb on + strand, within AO353_28105at 6128.297 kb on - strand, within AO353_28105at 6128.297 kb on - strand, within AO353_28105at 6128.297 kb on - strand, within AO353_28105at 6128.297 kb on - strand, within AO353_28105at 6128.317 kb on + strand, within AO353_28105at 6128.317 kb on + strand, within AO353_28105at 6128.318 kb on - strand, within AO353_28105at 6128.318 kb on - strand, within AO353_28105at 6128.318 kb on - strand, within AO353_28105at 6128.439 kb on + strand, within AO353_28105at 6128.459 kb on + strand, within AO353_28105at 6128.459 kb on + strand, within AO353_28105at 6128.459 kb on + strand, within AO353_28105at 6128.460 kb on - strand, within AO353_28105at 6128.460 kb on - strand, within AO353_28105at 6128.460 kb on - strand, within AO353_28105at 6128.482 kb on + strand, within AO353_28105at 6128.482 kb on + strand, within AO353_28105at 6128.482 kb on + strand, within AO353_28105at 6128.816 kb on - strand, within AO353_28105at 6128.833 kb on + strand, within AO353_28105at 6128.833 kb on + strand, within AO353_28105at 6128.833 kb on + strand, within AO353_28105at 6128.833 kb on + strand, within AO353_28105at 6128.833 kb on + strand, within AO353_28105at 6128.833 kb on + strand, within AO353_28105at 6128.833 kb on + strand, within AO353_28105at 6128.833 kb on + strand, within AO353_28105at 6128.833 kb on + strand, within AO353_28105at 6128.833 kb on + strand, within AO353_28105at 6128.833 kb on + strand, within AO353_28105at 6128.833 kb on + strand, within AO353_28105at 6128.834 kb on - strand, within AO353_28105at 6128.834 kb on - strand, within AO353_28105at 6128.834 kb on - strand, within AO353_28105at 6128.834 kb on - strand, within AO353_28105at 6128.834 kb on - strand, within AO353_28105at 6128.834 kb on - strand, within AO353_28105at 6128.834 kb on - strand, within AO353_28105at 6128.834 kb on - strand, within AO353_28105at 6128.834 kb on - strand, within AO353_28105at 6128.834 kb on - strand, within AO353_28105at 6128.843 kb on - strand, within AO353_28105

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 10C
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6,125,415 + AO353_28095 0.38 -0.0
6,125,416 - AO353_28095 0.38 +0.2
6,125,416 - AO353_28095 0.38 -0.9
6,125,416 - AO353_28095 0.38 -0.8
6,125,782 + AO353_28095 0.63 -0.7
6,125,783 - AO353_28095 0.63 -0.1
6,125,903 + AO353_28095 0.71 +1.2
6,125,903 + AO353_28095 0.71 +0.4
6,125,904 - AO353_28095 0.71 -0.0
6,126,069 + AO353_28095 0.82 +0.4
6,126,069 + AO353_28095 0.82 +0.8
6,126,069 + AO353_28095 0.82 -0.4
6,126,069 + AO353_28095 0.82 -1.0
6,126,070 - AO353_28095 0.82 -0.9
6,126,070 - AO353_28095 0.82 -0.0
6,126,070 - AO353_28095 0.82 -0.7
6,126,070 - AO353_28095 0.82 +0.0
6,126,070 - AO353_28095 0.82 -1.4
6,126,070 - AO353_28095 0.82 +0.4
6,126,199 + -0.6
6,126,199 + +0.4
6,126,200 - +0.8
6,126,200 - -0.1
6,126,200 - +0.4
6,126,200 - -0.4
6,126,230 + -0.8
6,126,230 + +1.4
6,126,230 + -0.0
6,126,230 + +0.2
6,126,230 + -0.1
6,126,230 + +0.6
6,126,230 + +0.5
6,126,230 + -0.2
6,126,231 - -0.5
6,126,231 - +0.5
6,126,233 - +1.6
6,126,233 - +0.0
6,126,249 - -0.2
6,126,315 + -0.1
6,126,323 + -0.0
6,126,324 - -0.1
6,126,356 + -0.8
6,126,356 + +1.2
6,126,357 - -0.4
6,126,357 - +0.2
6,126,357 - -0.2
6,126,357 - +0.2
6,126,357 - +0.2
6,126,633 - AO353_28100 0.19 -0.6
6,126,633 - AO353_28100 0.19 +0.6
6,126,705 + AO353_28100 0.23 -0.2
6,126,862 - AO353_28100 0.34 -0.5
6,127,115 + AO353_28100 0.51 -0.8
6,127,308 + AO353_28100 0.64 +1.0
6,127,309 - AO353_28100 0.64 -0.7
6,127,356 - AO353_28100 0.67 -0.8
6,127,605 - AO353_28100 0.83 -2.9
6,127,676 + AO353_28100 0.88 +0.0
6,127,676 + AO353_28100 0.88 -0.5
6,127,676 + AO353_28100 0.88 -0.1
6,127,676 + AO353_28100 0.88 -0.5
6,127,676 + AO353_28100 0.88 -0.4
6,127,676 + AO353_28100 0.88 -0.4
6,127,677 - AO353_28100 0.88 -1.0
6,127,677 - AO353_28100 0.88 +0.5
6,127,687 + AO353_28100 0.89 +0.0
6,127,732 - +0.3
6,127,732 - +0.1
6,127,776 + -1.0
6,127,776 + +0.2
6,127,776 + -0.5
6,127,777 - +0.7
6,127,777 - -0.5
6,127,777 - +1.2
6,127,778 + +1.9
6,127,778 + -1.2
6,127,778 + +0.7
6,127,778 + -0.7
6,127,778 + +0.2
6,127,778 + -1.2
6,127,778 + -1.3
6,127,778 + +0.5
6,127,778 + -0.2
6,127,778 + -1.0
6,127,779 - +0.1
6,127,779 - -0.6
6,127,779 - -0.2
6,127,779 - +0.0
6,127,779 - -0.7
6,127,779 - -1.2
6,128,078 + AO353_28105 0.20 +1.2
6,128,078 + AO353_28105 0.20 +0.2
6,128,100 + AO353_28105 0.22 -0.0
6,128,100 + AO353_28105 0.22 +0.4
6,128,100 + -0.3
6,128,100 + AO353_28105 0.22 -0.1
6,128,100 + AO353_28105 0.22 -0.3
6,128,100 + AO353_28105 0.22 -2.3
6,128,100 + AO353_28105 0.22 -0.5
6,128,100 + AO353_28105 0.22 -0.1
6,128,100 + AO353_28105 0.22 +1.2
6,128,100 + AO353_28105 0.22 -0.6
6,128,100 + AO353_28105 0.22 +0.5
6,128,101 - AO353_28105 0.22 +0.8
6,128,101 - AO353_28105 0.22 +0.5
6,128,101 - AO353_28105 0.22 -1.1
6,128,101 - AO353_28105 0.22 +1.0
6,128,101 - AO353_28105 0.22 +0.2
6,128,101 - AO353_28105 0.22 +0.5
6,128,101 - AO353_28105 0.22 +0.9
6,128,113 + AO353_28105 0.23 -0.6
6,128,113 + AO353_28105 0.23 +0.1
6,128,113 + AO353_28105 0.23 +0.7
6,128,114 - AO353_28105 0.23 -0.1
6,128,114 - AO353_28105 0.23 +0.2
6,128,114 - AO353_28105 0.23 +1.5
6,128,117 + AO353_28105 0.23 -1.4
6,128,117 + AO353_28105 0.23 +1.3
6,128,118 - AO353_28105 0.23 -1.0
6,128,118 - AO353_28105 0.23 -0.3
6,128,118 - AO353_28105 0.23 +0.3
6,128,153 + AO353_28105 0.26 -1.6
6,128,154 - AO353_28105 0.27 -0.6
6,128,154 - AO353_28105 0.27 -0.0
6,128,242 + AO353_28105 0.34 +0.6
6,128,242 + AO353_28105 0.34 +1.5
6,128,242 + -1.3
6,128,242 + AO353_28105 0.34 -1.3
6,128,242 + AO353_28105 0.34 -0.2
6,128,242 + AO353_28105 0.34 -0.8
6,128,242 + AO353_28105 0.34 -1.0
6,128,242 + AO353_28105 0.34 -0.9
6,128,296 + AO353_28105 0.39 -0.1
6,128,296 + AO353_28105 0.39 +0.3
6,128,296 + AO353_28105 0.39 +0.7
6,128,296 + AO353_28105 0.39 -1.6
6,128,296 + AO353_28105 0.39 +0.2
6,128,296 + AO353_28105 0.39 +0.5
6,128,296 + AO353_28105 0.39 -0.3
6,128,297 - AO353_28105 0.39 +0.3
6,128,297 - AO353_28105 0.39 +0.9
6,128,297 - AO353_28105 0.39 -0.2
6,128,297 - AO353_28105 0.39 +1.8
6,128,317 + AO353_28105 0.41 -0.6
6,128,317 + AO353_28105 0.41 +0.6
6,128,318 - AO353_28105 0.41 -0.3
6,128,318 - AO353_28105 0.41 -0.6
6,128,318 - AO353_28105 0.41 -0.3
6,128,439 + AO353_28105 0.52 +0.0
6,128,459 + AO353_28105 0.53 +0.1
6,128,459 + AO353_28105 0.53 -0.6
6,128,459 + AO353_28105 0.53 -1.1
6,128,460 - AO353_28105 0.53 +0.8
6,128,460 - AO353_28105 0.53 -0.8
6,128,460 - AO353_28105 0.53 +0.0
6,128,482 + AO353_28105 0.55 -1.0
6,128,482 + AO353_28105 0.55 +0.5
6,128,482 + AO353_28105 0.55 +0.4
6,128,816 - AO353_28105 0.85 -1.2
6,128,833 + AO353_28105 0.86 -0.3
6,128,833 + AO353_28105 0.86 +0.7
6,128,833 + AO353_28105 0.86 -0.8
6,128,833 + AO353_28105 0.86 +1.2
6,128,833 + AO353_28105 0.86 +1.6
6,128,833 + AO353_28105 0.86 +0.7
6,128,833 + AO353_28105 0.86 +0.1
6,128,833 + AO353_28105 0.86 +0.5
6,128,833 + AO353_28105 0.86 -0.6
6,128,833 + AO353_28105 0.86 -0.5
6,128,833 + AO353_28105 0.86 +0.4
6,128,833 + AO353_28105 0.86 -0.2
6,128,834 - AO353_28105 0.86 +0.5
6,128,834 - AO353_28105 0.86 +1.2
6,128,834 - AO353_28105 0.86 +0.4
6,128,834 - AO353_28105 0.86 +0.0
6,128,834 - AO353_28105 0.86 -1.6
6,128,834 - AO353_28105 0.86 -0.5
6,128,834 - AO353_28105 0.86 +0.1
6,128,834 - AO353_28105 0.86 +0.3
6,128,834 - AO353_28105 0.86 -1.7
6,128,834 - AO353_28105 0.86 +0.1
6,128,843 - AO353_28105 0.87 +0.1

Or see this region's nucleotide sequence