Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07570 and AO353_07575 overlap by 4 nucleotides AO353_07575 and AO353_07580 are separated by 188 nucleotides AO353_07580 and AO353_07585 are separated by 128 nucleotides
AO353_07570: AO353_07570 - cyclic nucleotide-binding protein, at 1,667,499 to 1,669,439
_07570
AO353_07575: AO353_07575 - DNA polymerase III subunit epsilon, at 1,669,436 to 1,670,143
_07575
AO353_07580: AO353_07580 - glutathione S-transferase, at 1,670,332 to 1,670,961
_07580
AO353_07585: AO353_07585 - hypothetical protein, at 1,671,090 to 1,672,451
_07585
Position (kb)
1670
1671 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1669.435 kb on + strand at 1669.436 kb on - strand at 1669.436 kb on - strand at 1669.436 kb on - strand at 1669.436 kb on - strand at 1669.436 kb on - strand at 1669.436 kb on - strand at 1669.436 kb on - strand at 1669.677 kb on + strand, within AO353_07575 at 1669.677 kb on + strand, within AO353_07575 at 1669.677 kb on + strand, within AO353_07575 at 1669.678 kb on - strand, within AO353_07575 at 1669.678 kb on - strand, within AO353_07575 at 1669.705 kb on + strand, within AO353_07575 at 1669.705 kb on + strand, within AO353_07575 at 1669.713 kb on + strand, within AO353_07575 at 1669.713 kb on + strand, within AO353_07575 at 1669.713 kb on + strand, within AO353_07575 at 1669.713 kb on + strand, within AO353_07575 at 1669.714 kb on - strand, within AO353_07575 at 1669.714 kb on - strand, within AO353_07575 at 1669.714 kb on - strand, within AO353_07575 at 1669.714 kb on - strand, within AO353_07575 at 1669.714 kb on - strand, within AO353_07575 at 1669.714 kb on - strand, within AO353_07575 at 1669.999 kb on + strand, within AO353_07575 at 1670.034 kb on + strand, within AO353_07575 at 1670.034 kb on + strand, within AO353_07575 at 1670.034 kb on + strand, within AO353_07575 at 1670.034 kb on + strand, within AO353_07575 at 1670.035 kb on - strand, within AO353_07575 at 1670.035 kb on - strand, within AO353_07575 at 1670.035 kb on - strand, within AO353_07575 at 1670.035 kb on - strand, within AO353_07575 at 1670.035 kb on - strand, within AO353_07575 at 1670.035 kb on - strand, within AO353_07575 at 1670.035 kb on - strand, within AO353_07575 at 1670.141 kb on + strand at 1670.141 kb on + strand at 1670.142 kb on - strand at 1670.142 kb on - strand at 1670.142 kb on - strand at 1670.142 kb on - strand at 1670.142 kb on - strand at 1670.189 kb on + strand at 1670.189 kb on + strand at 1670.189 kb on + strand at 1670.189 kb on + strand at 1670.189 kb on + strand at 1670.190 kb on - strand at 1670.211 kb on - strand at 1670.253 kb on + strand at 1670.253 kb on + strand at 1670.254 kb on - strand at 1670.254 kb on - strand at 1670.280 kb on + strand at 1670.280 kb on + strand at 1670.280 kb on + strand at 1670.280 kb on + strand at 1670.280 kb on + strand at 1670.280 kb on + strand at 1670.281 kb on - strand at 1670.281 kb on - strand at 1670.281 kb on - strand at 1670.281 kb on - strand at 1670.281 kb on - strand at 1670.281 kb on - strand at 1670.281 kb on - strand at 1670.283 kb on + strand at 1670.283 kb on + strand at 1670.283 kb on + strand at 1670.283 kb on + strand at 1670.283 kb on + strand at 1670.283 kb on + strand at 1670.283 kb on + strand at 1670.284 kb on - strand at 1670.284 kb on - strand at 1670.284 kb on - strand at 1670.284 kb on - strand at 1670.284 kb on - strand at 1670.288 kb on + strand at 1670.288 kb on + strand at 1670.288 kb on + strand at 1670.288 kb on + strand at 1670.289 kb on - strand at 1670.289 kb on - strand at 1670.289 kb on - strand at 1670.314 kb on + strand at 1670.315 kb on - strand at 1670.315 kb on - strand at 1670.315 kb on - strand at 1670.315 kb on - strand at 1670.377 kb on + strand at 1670.377 kb on + strand at 1670.378 kb on - strand at 1670.378 kb on - strand at 1670.378 kb on - strand at 1670.378 kb on - strand at 1670.378 kb on - strand at 1670.378 kb on - strand at 1670.378 kb on - strand at 1670.378 kb on - strand at 1670.537 kb on + strand, within AO353_07580 at 1670.537 kb on + strand, within AO353_07580 at 1670.539 kb on + strand, within AO353_07580 at 1670.539 kb on + strand, within AO353_07580 at 1670.539 kb on + strand, within AO353_07580 at 1670.539 kb on + strand, within AO353_07580 at 1670.540 kb on - strand, within AO353_07580 at 1670.540 kb on - strand, within AO353_07580 at 1670.540 kb on - strand, within AO353_07580 at 1670.540 kb on - strand, within AO353_07580 at 1670.540 kb on - strand, within AO353_07580 at 1670.540 kb on - strand, within AO353_07580 at 1670.540 kb on - strand, within AO353_07580 at 1670.540 kb on - strand, within AO353_07580 at 1670.563 kb on + strand, within AO353_07580 at 1670.564 kb on - strand, within AO353_07580 at 1670.845 kb on + strand, within AO353_07580 at 1670.845 kb on + strand, within AO353_07580 at 1670.908 kb on + strand at 1670.908 kb on + strand at 1670.908 kb on + strand at 1670.918 kb on + strand at 1670.918 kb on + strand at 1670.918 kb on + strand at 1670.918 kb on + strand at 1670.919 kb on - strand at 1670.919 kb on - strand at 1670.959 kb on + strand at 1670.959 kb on + strand at 1670.959 kb on + strand at 1670.960 kb on - strand at 1671.022 kb on + strand at 1671.023 kb on - strand at 1671.091 kb on + strand at 1671.091 kb on + strand at 1671.091 kb on + strand at 1671.091 kb on + strand at 1671.091 kb on + strand at 1671.091 kb on + strand at 1671.092 kb on - strand at 1671.092 kb on - strand at 1671.092 kb on - strand at 1671.092 kb on - strand at 1671.092 kb on - strand at 1671.092 kb on - strand at 1671.097 kb on + strand at 1671.097 kb on + strand at 1671.097 kb on + strand at 1671.097 kb on + strand at 1671.097 kb on + strand at 1671.097 kb on + strand at 1671.097 kb on + strand at 1671.097 kb on + strand at 1671.097 kb on + strand at 1671.097 kb on + strand at 1671.097 kb on + strand at 1671.097 kb on + strand at 1671.097 kb on + strand at 1671.098 kb on - strand at 1671.098 kb on - strand at 1671.098 kb on - strand at 1671.098 kb on - strand at 1671.098 kb on - strand at 1671.098 kb on - strand at 1671.098 kb on - strand at 1671.098 kb on - strand at 1671.098 kb on - strand at 1671.098 kb on - strand at 1671.098 kb on - strand at 1671.098 kb on - strand at 1671.098 kb on - strand at 1671.098 kb on - strand at 1671.098 kb on - strand at 1671.098 kb on - strand at 1671.098 kb on - strand at 1671.167 kb on + strand at 1671.167 kb on + strand at 1671.167 kb on + strand at 1671.167 kb on + strand at 1671.168 kb on - strand at 1671.218 kb on - strand at 1671.253 kb on + strand, within AO353_07585 at 1671.254 kb on - strand, within AO353_07585 at 1671.254 kb on - strand, within AO353_07585 at 1671.319 kb on + strand, within AO353_07585 at 1671.319 kb on + strand, within AO353_07585 at 1671.319 kb on + strand, within AO353_07585 at 1671.320 kb on - strand, within AO353_07585 at 1671.320 kb on - strand, within AO353_07585 at 1671.361 kb on + strand, within AO353_07585 at 1671.361 kb on + strand, within AO353_07585 at 1671.362 kb on - strand, within AO353_07585 at 1671.362 kb on - strand, within AO353_07585 at 1671.362 kb on - strand, within AO353_07585 at 1671.409 kb on + strand, within AO353_07585 at 1671.409 kb on + strand, within AO353_07585 at 1671.409 kb on + strand, within AO353_07585 at 1671.409 kb on + strand, within AO353_07585 at 1671.409 kb on + strand, within AO353_07585 at 1671.410 kb on - strand, within AO353_07585 at 1671.410 kb on - strand, within AO353_07585 at 1671.442 kb on + strand, within AO353_07585 at 1671.443 kb on - strand, within AO353_07585 at 1671.513 kb on - strand, within AO353_07585 at 1671.513 kb on - strand, within AO353_07585 at 1671.526 kb on + strand, within AO353_07585 at 1671.526 kb on + strand, within AO353_07585 at 1671.527 kb on - strand, within AO353_07585 at 1671.527 kb on - strand, within AO353_07585 at 1671.527 kb on - strand, within AO353_07585 at 1671.553 kb on + strand, within AO353_07585 at 1671.553 kb on + strand, within AO353_07585 at 1671.553 kb on + strand, within AO353_07585 at 1671.554 kb on - strand, within AO353_07585 at 1671.554 kb on - strand, within AO353_07585 at 1671.554 kb on - strand, within AO353_07585 at 1671.632 kb on + strand, within AO353_07585 at 1671.632 kb on + strand, within AO353_07585 at 1671.632 kb on + strand, within AO353_07585 at 1671.632 kb on + strand, within AO353_07585 at 1671.632 kb on + strand, within AO353_07585 at 1671.632 kb on + strand, within AO353_07585 at 1671.632 kb on + strand, within AO353_07585 at 1671.633 kb on - strand, within AO353_07585 at 1671.633 kb on - strand, within AO353_07585 at 1671.633 kb on - strand, within AO353_07585 at 1671.633 kb on - strand, within AO353_07585 at 1671.633 kb on - strand, within AO353_07585 at 1671.702 kb on + strand, within AO353_07585 at 1671.702 kb on + strand, within AO353_07585 at 1671.703 kb on - strand, within AO353_07585 at 1671.703 kb on - strand, within AO353_07585 at 1671.703 kb on - strand, within AO353_07585 at 1671.703 kb on - strand, within AO353_07585 at 1671.703 kb on - strand, within AO353_07585 at 1671.703 kb on - strand, within AO353_07585 at 1671.703 kb on - strand, within AO353_07585 at 1671.703 kb on - strand, within AO353_07585 at 1671.703 kb on - strand, within AO353_07585 at 1671.724 kb on + strand, within AO353_07585 at 1671.724 kb on + strand, within AO353_07585 at 1671.724 kb on + strand, within AO353_07585 at 1671.725 kb on - strand, within AO353_07585 at 1671.725 kb on - strand, within AO353_07585 at 1671.725 kb on - strand, within AO353_07585 at 1671.725 kb on - strand, within AO353_07585 at 1671.725 kb on - strand, within AO353_07585 at 1671.725 kb on - strand at 1671.725 kb on - strand, within AO353_07585 at 1671.725 kb on - strand, within AO353_07585 at 1671.725 kb on - strand, within AO353_07585 at 1671.725 kb on - strand, within AO353_07585 at 1671.725 kb on - strand, within AO353_07585 at 1671.725 kb on - strand, within AO353_07585 at 1671.725 kb on - strand, within AO353_07585 at 1671.734 kb on + strand, within AO353_07585 at 1671.782 kb on + strand, within AO353_07585 at 1671.782 kb on + strand, within AO353_07585 at 1671.782 kb on + strand, within AO353_07585 at 1671.783 kb on - strand, within AO353_07585 at 1671.786 kb on + strand, within AO353_07585
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 1,669,435 + +0.5 1,669,436 - +0.8 1,669,436 - -1.9 1,669,436 - -0.7 1,669,436 - +0.0 1,669,436 - -0.6 1,669,436 - +0.0 1,669,436 - -0.6 1,669,677 + AO353_07575 0.34 -0.4 1,669,677 + AO353_07575 0.34 +0.4 1,669,677 + AO353_07575 0.34 -1.5 1,669,678 - AO353_07575 0.34 -0.6 1,669,678 - AO353_07575 0.34 -0.2 1,669,705 + AO353_07575 0.38 -1.1 1,669,705 + AO353_07575 0.38 -0.4 1,669,713 + AO353_07575 0.39 -1.5 1,669,713 + AO353_07575 0.39 -0.1 1,669,713 + AO353_07575 0.39 +0.9 1,669,713 + AO353_07575 0.39 +1.0 1,669,714 - AO353_07575 0.39 +0.3 1,669,714 - AO353_07575 0.39 -1.8 1,669,714 - AO353_07575 0.39 -0.5 1,669,714 - AO353_07575 0.39 -0.8 1,669,714 - AO353_07575 0.39 +0.0 1,669,714 - AO353_07575 0.39 +0.1 1,669,999 + AO353_07575 0.80 -0.8 1,670,034 + AO353_07575 0.84 +0.5 1,670,034 + AO353_07575 0.84 -0.4 1,670,034 + AO353_07575 0.84 -1.0 1,670,034 + AO353_07575 0.84 -0.8 1,670,035 - AO353_07575 0.85 +0.6 1,670,035 - AO353_07575 0.85 +0.2 1,670,035 - AO353_07575 0.85 +0.9 1,670,035 - AO353_07575 0.85 +0.2 1,670,035 - AO353_07575 0.85 -1.1 1,670,035 - AO353_07575 0.85 +0.3 1,670,035 - AO353_07575 0.85 -2.0 1,670,141 + -1.4 1,670,141 + -0.4 1,670,142 - -0.4 1,670,142 - +0.6 1,670,142 - -1.4 1,670,142 - -0.4 1,670,142 - +0.9 1,670,189 + +0.2 1,670,189 + +0.8 1,670,189 + +1.0 1,670,189 + +0.0 1,670,189 + -0.7 1,670,190 - -0.5 1,670,211 - -0.5 1,670,253 + +0.3 1,670,253 + +0.4 1,670,254 - +1.5 1,670,254 - -1.4 1,670,280 + +0.5 1,670,280 + +0.0 1,670,280 + +0.6 1,670,280 + +0.5 1,670,280 + -1.4 1,670,280 + +0.9 1,670,281 - -1.2 1,670,281 - -2.5 1,670,281 - +0.0 1,670,281 - -0.9 1,670,281 - +0.1 1,670,281 - +0.0 1,670,281 - -0.3 1,670,283 + -0.4 1,670,283 + -0.7 1,670,283 + +0.3 1,670,283 + -0.8 1,670,283 + +0.2 1,670,283 + +1.9 1,670,283 + +0.2 1,670,284 - -0.1 1,670,284 - -1.0 1,670,284 - -0.1 1,670,284 - -1.1 1,670,284 - +0.4 1,670,288 + -0.4 1,670,288 + +0.8 1,670,288 + -0.2 1,670,288 + +0.9 1,670,289 - -1.2 1,670,289 - +0.2 1,670,289 - +0.4 1,670,314 + +0.8 1,670,315 - +0.8 1,670,315 - -0.1 1,670,315 - -0.2 1,670,315 - -1.2 1,670,377 + +0.7 1,670,377 + +0.5 1,670,378 - +0.4 1,670,378 - -0.5 1,670,378 - -1.1 1,670,378 - -0.1 1,670,378 - +0.9 1,670,378 - -0.6 1,670,378 - +0.6 1,670,378 - +3.2 1,670,537 + AO353_07580 0.33 +0.1 1,670,537 + AO353_07580 0.33 +1.0 1,670,539 + AO353_07580 0.33 -0.8 1,670,539 + AO353_07580 0.33 +0.2 1,670,539 + AO353_07580 0.33 +1.8 1,670,539 + AO353_07580 0.33 -1.3 1,670,540 - AO353_07580 0.33 +1.1 1,670,540 - AO353_07580 0.33 +1.5 1,670,540 - AO353_07580 0.33 +0.4 1,670,540 - AO353_07580 0.33 -0.1 1,670,540 - AO353_07580 0.33 +1.2 1,670,540 - AO353_07580 0.33 +0.3 1,670,540 - AO353_07580 0.33 -0.6 1,670,540 - AO353_07580 0.33 +0.5 1,670,563 + AO353_07580 0.37 +0.8 1,670,564 - AO353_07580 0.37 +1.0 1,670,845 + AO353_07580 0.81 -0.1 1,670,845 + AO353_07580 0.81 -0.2 1,670,908 + +0.8 1,670,908 + -0.7 1,670,908 + +0.2 1,670,918 + +0.2 1,670,918 + -0.8 1,670,918 + -0.5 1,670,918 + -0.1 1,670,919 - +3.2 1,670,919 - -0.3 1,670,959 + +0.0 1,670,959 + -0.7 1,670,959 + +0.8 1,670,960 - +0.1 1,671,022 + +0.6 1,671,023 - -0.1 1,671,091 + -0.7 1,671,091 + +1.1 1,671,091 + +0.2 1,671,091 + -0.2 1,671,091 + +0.0 1,671,091 + +1.1 1,671,092 - +2.3 1,671,092 - +0.1 1,671,092 - -0.5 1,671,092 - -0.8 1,671,092 - -0.7 1,671,092 - -0.2 1,671,097 + -1.2 1,671,097 + -1.1 1,671,097 + +1.0 1,671,097 + +0.9 1,671,097 + +1.4 1,671,097 + -0.8 1,671,097 + -0.5 1,671,097 + +0.2 1,671,097 + -0.2 1,671,097 + +0.0 1,671,097 + -0.5 1,671,097 + -0.7 1,671,097 + +0.2 1,671,098 - -0.6 1,671,098 - -0.7 1,671,098 - -1.9 1,671,098 - -0.2 1,671,098 - +1.5 1,671,098 - -1.0 1,671,098 - +0.6 1,671,098 - +1.0 1,671,098 - +0.3 1,671,098 - +0.8 1,671,098 - -0.9 1,671,098 - +1.4 1,671,098 - -0.4 1,671,098 - -0.0 1,671,098 - +0.0 1,671,098 - +0.8 1,671,098 - +1.2 1,671,167 + -0.2 1,671,167 + +0.6 1,671,167 + -2.7 1,671,167 + +0.3 1,671,168 - +0.4 1,671,218 - -2.2 1,671,253 + AO353_07585 0.12 +0.6 1,671,254 - AO353_07585 0.12 +1.3 1,671,254 - AO353_07585 0.12 +0.5 1,671,319 + AO353_07585 0.17 -0.4 1,671,319 + AO353_07585 0.17 -0.0 1,671,319 + AO353_07585 0.17 -1.1 1,671,320 - AO353_07585 0.17 +0.2 1,671,320 - AO353_07585 0.17 +0.8 1,671,361 + AO353_07585 0.20 +0.8 1,671,361 + AO353_07585 0.20 -1.5 1,671,362 - AO353_07585 0.20 +0.3 1,671,362 - AO353_07585 0.20 +0.4 1,671,362 - AO353_07585 0.20 -0.4 1,671,409 + AO353_07585 0.23 -0.4 1,671,409 + AO353_07585 0.23 -0.0 1,671,409 + AO353_07585 0.23 -0.7 1,671,409 + AO353_07585 0.23 -2.6 1,671,409 + AO353_07585 0.23 -1.5 1,671,410 - AO353_07585 0.23 +0.6 1,671,410 - AO353_07585 0.23 +0.2 1,671,442 + AO353_07585 0.26 -1.4 1,671,443 - AO353_07585 0.26 -0.6 1,671,513 - AO353_07585 0.31 -0.0 1,671,513 - AO353_07585 0.31 +0.5 1,671,526 + AO353_07585 0.32 -0.4 1,671,526 + AO353_07585 0.32 +1.9 1,671,527 - AO353_07585 0.32 -0.9 1,671,527 - AO353_07585 0.32 -0.9 1,671,527 - AO353_07585 0.32 -2.7 1,671,553 + AO353_07585 0.34 +0.4 1,671,553 + AO353_07585 0.34 +1.0 1,671,553 + AO353_07585 0.34 +0.6 1,671,554 - AO353_07585 0.34 +0.0 1,671,554 - AO353_07585 0.34 -0.7 1,671,554 - AO353_07585 0.34 -0.3 1,671,632 + AO353_07585 0.40 +0.2 1,671,632 + AO353_07585 0.40 -0.6 1,671,632 + AO353_07585 0.40 -0.4 1,671,632 + AO353_07585 0.40 +1.6 1,671,632 + AO353_07585 0.40 +0.5 1,671,632 + AO353_07585 0.40 +0.1 1,671,632 + AO353_07585 0.40 -0.0 1,671,633 - AO353_07585 0.40 -0.5 1,671,633 - AO353_07585 0.40 +1.0 1,671,633 - AO353_07585 0.40 -0.0 1,671,633 - AO353_07585 0.40 -1.4 1,671,633 - AO353_07585 0.40 -0.3 1,671,702 + AO353_07585 0.45 -0.6 1,671,702 + AO353_07585 0.45 -0.5 1,671,703 - AO353_07585 0.45 +1.1 1,671,703 - AO353_07585 0.45 -1.2 1,671,703 - AO353_07585 0.45 -0.2 1,671,703 - AO353_07585 0.45 -0.2 1,671,703 - AO353_07585 0.45 -1.7 1,671,703 - AO353_07585 0.45 +1.2 1,671,703 - AO353_07585 0.45 +0.6 1,671,703 - AO353_07585 0.45 -0.6 1,671,703 - AO353_07585 0.45 +0.6 1,671,724 + AO353_07585 0.47 +0.1 1,671,724 + AO353_07585 0.47 -0.9 1,671,724 + AO353_07585 0.47 -0.5 1,671,725 - AO353_07585 0.47 -0.4 1,671,725 - AO353_07585 0.47 +0.5 1,671,725 - AO353_07585 0.47 +0.3 1,671,725 - AO353_07585 0.47 +0.3 1,671,725 - AO353_07585 0.47 -0.6 1,671,725 - -0.2 1,671,725 - AO353_07585 0.47 +1.2 1,671,725 - AO353_07585 0.47 -0.4 1,671,725 - AO353_07585 0.47 -2.4 1,671,725 - AO353_07585 0.47 +0.1 1,671,725 - AO353_07585 0.47 -0.9 1,671,725 - AO353_07585 0.47 -0.2 1,671,725 - AO353_07585 0.47 +0.6 1,671,734 + AO353_07585 0.47 +1.3 1,671,782 + AO353_07585 0.51 +1.2 1,671,782 + AO353_07585 0.51 -2.1 1,671,782 + AO353_07585 0.51 +0.2 1,671,783 - AO353_07585 0.51 -1.2 1,671,786 + AO353_07585 0.51 +0.2
Or see this region's nucleotide sequence