Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3045

Experiment: 5 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3044 and DvMF_3045 are separated by 214 nucleotidesDvMF_3045 and DvMF_3046 are separated by 355 nucleotides DvMF_3044: DvMF_3044 - hypothetical protein (RefSeq), at 3,841,260 to 3,842,492 _3044 DvMF_3045: DvMF_3045 - hypothetical protein (RefSeq), at 3,842,707 to 3,843,156 _3045 DvMF_3046: DvMF_3046 - cobalbumin biosynthesis protein (RefSeq), at 3,843,512 to 3,844,156 _3046 Position (kb) 3842 3843 3844Strain fitness (log2 ratio) -3 -2 -1 0 1at 3841.722 kb on + strand, within DvMF_3044at 3842.357 kb on + strand, within DvMF_3044at 3842.376 kb on + strandat 3842.436 kb on + strandat 3842.757 kb on + strand, within DvMF_3045at 3842.791 kb on + strand, within DvMF_3045at 3842.908 kb on - strand, within DvMF_3045at 3843.026 kb on - strand, within DvMF_3045at 3843.186 kb on - strandat 3843.186 kb on - strandat 3843.298 kb on - strandat 3843.365 kb on + strandat 3843.380 kb on + strandat 3843.380 kb on + strandat 3843.395 kb on + strandat 3843.398 kb on - strandat 3843.423 kb on - strandat 3843.623 kb on + strand, within DvMF_3046at 3843.814 kb on - strand, within DvMF_3046at 3843.885 kb on + strand, within DvMF_3046at 3843.927 kb on + strand, within DvMF_3046

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 37C
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3,841,722 + DvMF_3044 0.37 +0.4
3,842,357 + DvMF_3044 0.89 -0.0
3,842,376 + -0.1
3,842,436 + +0.2
3,842,757 + DvMF_3045 0.11 +0.1
3,842,791 + DvMF_3045 0.19 -0.9
3,842,908 - DvMF_3045 0.45 -1.2
3,843,026 - DvMF_3045 0.71 +1.6
3,843,186 - +0.5
3,843,186 - +0.1
3,843,298 - +0.5
3,843,365 + +0.8
3,843,380 + +1.4
3,843,380 + +0.5
3,843,395 + +0.9
3,843,398 - +0.9
3,843,423 - -0.1
3,843,623 + DvMF_3046 0.17 -3.4
3,843,814 - DvMF_3046 0.47 +0.2
3,843,885 + DvMF_3046 0.58 -2.7
3,843,927 + DvMF_3046 0.64 -1.4

Or see this region's nucleotide sequence