Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2987

Experiment: 5 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2986 and DvMF_2987 are separated by 207 nucleotidesDvMF_2987 and DvMF_2988 are separated by 360 nucleotides DvMF_2986: DvMF_2986 - multi-sensor hybrid histidine kinase (RefSeq), at 3,762,159 to 3,765,845 _2986 DvMF_2987: DvMF_2987 - EF hand domain-containing protein (RefSeq), at 3,766,053 to 3,766,406 _2987 DvMF_2988: DvMF_2988 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 3,766,767 to 3,768,821 _2988 Position (kb) 3766 3767Strain fitness (log2 ratio) -1 0 1at 3765.123 kb on - strand, within DvMF_2986at 3765.160 kb on + strand, within DvMF_2986at 3765.164 kb on - strand, within DvMF_2986at 3765.227 kb on + strand, within DvMF_2986at 3765.258 kb on - strand, within DvMF_2986at 3765.311 kb on + strand, within DvMF_2986at 3765.361 kb on + strand, within DvMF_2986at 3765.482 kb on + strandat 3765.582 kb on - strandat 3765.659 kb on - strandat 3765.713 kb on - strandat 3765.885 kb on - strandat 3766.055 kb on + strandat 3766.063 kb on - strandat 3766.087 kb on - strandat 3766.104 kb on - strand, within DvMF_2987at 3766.374 kb on - strandat 3766.508 kb on + strandat 3766.516 kb on - strandat 3766.545 kb on - strandat 3766.555 kb on - strandat 3766.685 kb on + strandat 3766.782 kb on - strandat 3766.782 kb on - strandat 3766.938 kb on + strandat 3766.970 kb on + strandat 3767.055 kb on + strand, within DvMF_2988at 3767.258 kb on + strand, within DvMF_2988at 3767.307 kb on - strand, within DvMF_2988at 3767.345 kb on + strand, within DvMF_2988

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 37C
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3,765,123 - DvMF_2986 0.80 +0.0
3,765,160 + DvMF_2986 0.81 +0.3
3,765,164 - DvMF_2986 0.82 +0.1
3,765,227 + DvMF_2986 0.83 +0.1
3,765,258 - DvMF_2986 0.84 +0.0
3,765,311 + DvMF_2986 0.85 +0.0
3,765,361 + DvMF_2986 0.87 -0.2
3,765,482 + +0.3
3,765,582 - +0.4
3,765,659 - -0.1
3,765,713 - -0.1
3,765,885 - -0.1
3,766,055 + +0.5
3,766,063 - +0.5
3,766,087 - +0.3
3,766,104 - DvMF_2987 0.14 +1.2
3,766,374 - +0.6
3,766,508 + +0.5
3,766,516 - +0.7
3,766,545 - +0.5
3,766,555 - -0.2
3,766,685 + +0.4
3,766,782 - +0.4
3,766,782 - +1.0
3,766,938 + +0.9
3,766,970 + +0.2
3,767,055 + DvMF_2988 0.14 +0.3
3,767,258 + DvMF_2988 0.24 +0.7
3,767,307 - DvMF_2988 0.26 +0.3
3,767,345 + DvMF_2988 0.28 -0.5

Or see this region's nucleotide sequence