Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2643

Experiment: 5 day starvation, 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2642 and DvMF_2643 are separated by 515 nucleotidesDvMF_2643 and DvMF_2644 are separated by 800 nucleotides DvMF_2642: DvMF_2642 - hypothetical protein (RefSeq), at 3,341,320 to 3,342,693 _2642 DvMF_2643: DvMF_2643 - response regulator receiver modulated CheW protein (RefSeq), at 3,343,209 to 3,344,381 _2643 DvMF_2644: DvMF_2644 - putative two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,345,182 to 3,347,155 _2644 Position (kb) 3343 3344 3345Strain fitness (log2 ratio) -1 0 1at 3342.225 kb on - strand, within DvMF_2642at 3342.340 kb on - strand, within DvMF_2642at 3342.612 kb on + strandat 3343.053 kb on - strandat 3343.090 kb on + strandat 3343.217 kb on + strandat 3343.840 kb on - strand, within DvMF_2643at 3344.248 kb on - strand, within DvMF_2643at 3344.344 kb on + strandat 3344.461 kb on - strandat 3344.626 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 37C
remove
3,342,225 - DvMF_2642 0.66 +0.3
3,342,340 - DvMF_2642 0.74 +0.2
3,342,612 + +1.1
3,343,053 - +0.5
3,343,090 + +0.7
3,343,217 + +0.8
3,343,840 - DvMF_2643 0.54 +1.3
3,344,248 - DvMF_2643 0.89 +0.6
3,344,344 + +0.4
3,344,461 - +0.4
3,344,626 - +0.1

Or see this region's nucleotide sequence