Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2280

Experiment: 5 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2279 and DvMF_2280 are separated by 568 nucleotidesDvMF_2280 and DvMF_2281 are separated by 256 nucleotides DvMF_2279: DvMF_2279 - glycosyl transferase group 1 (RefSeq), at 2,866,612 to 2,867,733 _2279 DvMF_2280: DvMF_2280 - NAD-dependent epimerase/dehydratase (RefSeq), at 2,868,302 to 2,869,330 _2280 DvMF_2281: DvMF_2281 - transcriptional regulator, ArsR family (RefSeq), at 2,869,587 to 2,869,955 _2281 Position (kb) 2868 2869 2870Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2867.309 kb on + strand, within DvMF_2279at 2867.542 kb on - strand, within DvMF_2279at 2867.579 kb on + strand, within DvMF_2279at 2867.798 kb on + strandat 2867.856 kb on - strandat 2868.289 kb on - strandat 2868.359 kb on - strandat 2868.497 kb on + strand, within DvMF_2280at 2868.560 kb on - strand, within DvMF_2280at 2868.562 kb on + strand, within DvMF_2280at 2868.577 kb on - strand, within DvMF_2280at 2868.697 kb on + strand, within DvMF_2280at 2868.876 kb on + strand, within DvMF_2280at 2869.481 kb on + strandat 2869.994 kb on - strandat 2870.205 kb on - strandat 2870.236 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 37C
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2,867,309 + DvMF_2279 0.62 -1.5
2,867,542 - DvMF_2279 0.83 -5.0
2,867,579 + DvMF_2279 0.86 -2.0
2,867,798 + +0.6
2,867,856 - +0.4
2,868,289 - +0.3
2,868,359 - -1.4
2,868,497 + DvMF_2280 0.19 -2.4
2,868,560 - DvMF_2280 0.25 -3.5
2,868,562 + DvMF_2280 0.25 -3.2
2,868,577 - DvMF_2280 0.27 -2.7
2,868,697 + DvMF_2280 0.38 -1.8
2,868,876 + DvMF_2280 0.56 -2.4
2,869,481 + +0.4
2,869,994 - +0.2
2,870,205 - +0.7
2,870,236 + +0.4

Or see this region's nucleotide sequence