Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1777

Experiment: 5 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1776 and DvMF_1777 are separated by 97 nucleotidesDvMF_1777 and DvMF_1778 are separated by 131 nucleotidesDvMF_1778 and DvMF_1779 are separated by 66 nucleotides DvMF_1776: DvMF_1776 - GCN5-related N-acetyltransferase (RefSeq), at 2,173,448 to 2,176,144 _1776 DvMF_1777: DvMF_1777 - prophage PSPPH06, putative reverse transcriptase/maturase (RefSeq), at 2,176,242 to 2,177,597 _1777 DvMF_1778: DvMF_1778 - hypothetical protein (RefSeq), at 2,177,729 to 2,178,382 _1778 DvMF_1779: DvMF_1779 - helix-turn-helix protein, CopG family (RefSeq), at 2,178,449 to 2,178,697 _1779 Position (kb) 2176 2177 2178Strain fitness (log2 ratio) -1 0 1at 2175.302 kb on - strand, within DvMF_1776at 2175.451 kb on + strand, within DvMF_1776at 2175.618 kb on + strand, within DvMF_1776at 2175.635 kb on + strand, within DvMF_1776at 2177.954 kb on + strand, within DvMF_1778at 2178.403 kb on + strandat 2178.403 kb on + strandat 2178.403 kb on + strandat 2178.505 kb on - strand, within DvMF_1779

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 37C
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2,175,302 - DvMF_1776 0.69 -0.8
2,175,451 + DvMF_1776 0.74 -1.2
2,175,618 + DvMF_1776 0.80 -1.2
2,175,635 + DvMF_1776 0.81 -1.7
2,177,954 + DvMF_1778 0.34 +0.9
2,178,403 + -0.1
2,178,403 + +0.2
2,178,403 + +0.5
2,178,505 - DvMF_1779 0.22 +0.1

Or see this region's nucleotide sequence