Experiment: 5 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1517 and DvMF_1518 are separated by 794 nucleotides DvMF_1518 and DvMF_1519 overlap by 1 nucleotides DvMF_1519 and DvMF_1520 are separated by 15 nucleotides
DvMF_1517: DvMF_1517 - transcriptional regulator, TetR family (RefSeq), at 1,871,603 to 1,872,721
_1517
DvMF_1518: DvMF_1518 - NADH dehydrogenase (quinone) (RefSeq), at 1,873,516 to 1,875,462
_1518
DvMF_1519: DvMF_1519 - respiratory-chain NADH dehydrogenase subunit 1 (RefSeq), at 1,875,462 to 1,876,310
_1519
DvMF_1520: DvMF_1520 - NADH ubiquinone oxidoreductase 20 kDa subunit (RefSeq), at 1,876,326 to 1,876,799
_1520
Position (kb)
1873
1874
1875
1876 Strain fitness (log2 ratio)
-1
0
1 at 1872.552 kb on + strand, within DvMF_1517 at 1872.586 kb on - strand, within DvMF_1517 at 1872.649 kb on + strand at 1872.957 kb on - strand at 1872.957 kb on - strand at 1873.028 kb on + strand at 1873.163 kb on + strand at 1873.490 kb on + strand at 1873.502 kb on + strand at 1873.510 kb on - strand at 1873.521 kb on + strand at 1873.983 kb on - strand, within DvMF_1518 at 1874.159 kb on - strand, within DvMF_1518 at 1874.435 kb on + strand, within DvMF_1518 at 1874.572 kb on - strand, within DvMF_1518 at 1874.577 kb on + strand, within DvMF_1518 at 1874.591 kb on + strand, within DvMF_1518 at 1874.682 kb on + strand, within DvMF_1518 at 1874.753 kb on + strand, within DvMF_1518 at 1874.771 kb on - strand, within DvMF_1518 at 1874.778 kb on - strand, within DvMF_1518 at 1874.901 kb on + strand, within DvMF_1518 at 1875.141 kb on - strand, within DvMF_1518 at 1875.153 kb on - strand, within DvMF_1518 at 1875.273 kb on + strand at 1875.637 kb on + strand, within DvMF_1519 at 1875.674 kb on + strand, within DvMF_1519 at 1875.682 kb on - strand, within DvMF_1519 at 1875.684 kb on - strand, within DvMF_1519 at 1876.125 kb on - strand, within DvMF_1519 at 1876.221 kb on + strand, within DvMF_1519 at 1876.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 37C remove 1,872,552 + DvMF_1517 0.85 -0.5 1,872,586 - DvMF_1517 0.88 +0.5 1,872,649 + +0.2 1,872,957 - +0.7 1,872,957 - +0.3 1,873,028 + +0.6 1,873,163 + +0.8 1,873,490 + -0.1 1,873,502 + +0.1 1,873,510 - -0.1 1,873,521 + -0.3 1,873,983 - DvMF_1518 0.24 -1.0 1,874,159 - DvMF_1518 0.33 +0.2 1,874,435 + DvMF_1518 0.47 -0.2 1,874,572 - DvMF_1518 0.54 +0.1 1,874,577 + DvMF_1518 0.54 +0.2 1,874,591 + DvMF_1518 0.55 -0.2 1,874,682 + DvMF_1518 0.60 -0.0 1,874,753 + DvMF_1518 0.64 -0.6 1,874,771 - DvMF_1518 0.64 -0.2 1,874,778 - DvMF_1518 0.65 +0.0 1,874,901 + DvMF_1518 0.71 -0.5 1,875,141 - DvMF_1518 0.83 +0.1 1,875,153 - DvMF_1518 0.84 -0.3 1,875,273 + -0.4 1,875,637 + DvMF_1519 0.21 -0.6 1,875,674 + DvMF_1519 0.25 -0.2 1,875,682 - DvMF_1519 0.26 -0.6 1,875,684 - DvMF_1519 0.26 -0.6 1,876,125 - DvMF_1519 0.78 -0.3 1,876,221 + DvMF_1519 0.89 -0.4 1,876,320 - -1.1
Or see this region's nucleotide sequence