Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1234

Experiment: 5 day starvation, 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1233 and DvMF_1234 are separated by 445 nucleotidesDvMF_1234 and DvMF_1235 are separated by 55 nucleotidesDvMF_1235 and DvMF_1236 are separated by 134 nucleotides DvMF_1233: DvMF_1233 - formate dehydrogenase accessory protein (RefSeq), at 1,521,224 to 1,522,135 _1233 DvMF_1234: DvMF_1234 - methionine-R-sulfoxide reductase (RefSeq), at 1,522,581 to 1,523,453 _1234 DvMF_1235: DvMF_1235 - hypothetical protein (RefSeq), at 1,523,509 to 1,523,808 _1235 DvMF_1236: DvMF_1236 - hypothetical protein (RefSeq), at 1,523,943 to 1,524,692 _1236 Position (kb) 1522 1523 1524Strain fitness (log2 ratio) -1 0 1at 1521.681 kb on - strand, within DvMF_1233at 1521.751 kb on - strand, within DvMF_1233at 1521.803 kb on - strand, within DvMF_1233at 1521.846 kb on - strand, within DvMF_1233at 1522.071 kb on + strandat 1522.242 kb on + strandat 1522.252 kb on - strandat 1522.366 kb on + strandat 1522.451 kb on + strandat 1522.478 kb on - strandat 1522.478 kb on - strandat 1523.062 kb on - strand, within DvMF_1234at 1523.292 kb on - strand, within DvMF_1234at 1523.483 kb on + strandat 1523.501 kb on - strandat 1523.527 kb on - strandat 1524.021 kb on - strand, within DvMF_1236at 1524.035 kb on + strand, within DvMF_1236

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 37C
remove
1,521,681 - DvMF_1233 0.50 +0.4
1,521,751 - DvMF_1233 0.58 +0.8
1,521,803 - DvMF_1233 0.63 +0.4
1,521,846 - DvMF_1233 0.68 -0.1
1,522,071 + -0.5
1,522,242 + +1.0
1,522,252 - -0.1
1,522,366 + -0.1
1,522,451 + +0.2
1,522,478 - +0.5
1,522,478 - +0.2
1,523,062 - DvMF_1234 0.55 +0.8
1,523,292 - DvMF_1234 0.81 +1.2
1,523,483 + +0.6
1,523,501 - -0.2
1,523,527 - +0.4
1,524,021 - DvMF_1236 0.10 +1.1
1,524,035 + DvMF_1236 0.12 +0.4

Or see this region's nucleotide sequence