Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1060

Experiment: 5 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1059 and DvMF_1060 are separated by 280 nucleotidesDvMF_1060 and DvMF_1061 are separated by 260 nucleotidesDvMF_1061 and DvMF_1062 are separated by 1 nucleotides DvMF_1059: DvMF_1059 - putative PAS/PAC sensor protein (RefSeq), at 1,298,323 to 1,299,933 _1059 DvMF_1060: DvMF_1060 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 1,300,214 to 1,302,235 _1060 DvMF_1061: DvMF_1061 - hypothetical protein (RefSeq), at 1,302,496 to 1,302,813 _1061 DvMF_1062: DvMF_1062 - Tail Collar domain protein (RefSeq), at 1,302,815 to 1,304,407 _1062 Position (kb) 1300 1301 1302 1303Strain fitness (log2 ratio) -1 0 1at 1299.240 kb on + strand, within DvMF_1059at 1299.240 kb on + strand, within DvMF_1059at 1299.240 kb on + strand, within DvMF_1059at 1299.248 kb on - strand, within DvMF_1059at 1299.248 kb on - strand, within DvMF_1059at 1299.248 kb on - strand, within DvMF_1059at 1299.248 kb on - strand, within DvMF_1059at 1299.248 kb on - strand, within DvMF_1059at 1299.248 kb on - strand, within DvMF_1059at 1299.333 kb on + strand, within DvMF_1059at 1299.760 kb on + strand, within DvMF_1059at 1299.860 kb on + strandat 1299.930 kb on - strandat 1299.952 kb on - strandat 1300.019 kb on + strandat 1300.104 kb on - strandat 1300.270 kb on + strandat 1300.417 kb on + strand, within DvMF_1060at 1300.484 kb on - strand, within DvMF_1060at 1300.498 kb on - strand, within DvMF_1060at 1300.559 kb on + strand, within DvMF_1060at 1300.846 kb on + strand, within DvMF_1060at 1300.849 kb on - strand, within DvMF_1060at 1300.851 kb on + strand, within DvMF_1060at 1301.102 kb on + strand, within DvMF_1060at 1301.102 kb on + strand, within DvMF_1060at 1301.170 kb on - strand, within DvMF_1060at 1301.314 kb on - strand, within DvMF_1060at 1301.505 kb on + strand, within DvMF_1060at 1301.505 kb on + strand, within DvMF_1060at 1301.505 kb on + strand, within DvMF_1060at 1301.976 kb on + strand, within DvMF_1060at 1302.034 kb on + strandat 1302.211 kb on - strandat 1302.316 kb on + strandat 1302.354 kb on + strandat 1302.373 kb on + strandat 1302.650 kb on - strand, within DvMF_1061at 1302.717 kb on - strand, within DvMF_1061at 1302.742 kb on - strand, within DvMF_1061at 1302.781 kb on + strand, within DvMF_1061at 1302.838 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 37C
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1,299,240 + DvMF_1059 0.57 -0.0
1,299,240 + DvMF_1059 0.57 +0.1
1,299,240 + DvMF_1059 0.57 +1.1
1,299,248 - DvMF_1059 0.57 -1.1
1,299,248 - DvMF_1059 0.57 +0.8
1,299,248 - DvMF_1059 0.57 +0.0
1,299,248 - DvMF_1059 0.57 +0.7
1,299,248 - DvMF_1059 0.57 +0.1
1,299,248 - DvMF_1059 0.57 +0.0
1,299,333 + DvMF_1059 0.63 +1.3
1,299,760 + DvMF_1059 0.89 +0.7
1,299,860 + +0.3
1,299,930 - +0.2
1,299,952 - +0.3
1,300,019 + +0.3
1,300,104 - +0.6
1,300,270 + +0.6
1,300,417 + DvMF_1060 0.10 +0.9
1,300,484 - DvMF_1060 0.13 +1.0
1,300,498 - DvMF_1060 0.14 +1.1
1,300,559 + DvMF_1060 0.17 +0.7
1,300,846 + DvMF_1060 0.31 +0.8
1,300,849 - DvMF_1060 0.31 +0.6
1,300,851 + DvMF_1060 0.32 +0.5
1,301,102 + DvMF_1060 0.44 +0.4
1,301,102 + DvMF_1060 0.44 +0.5
1,301,170 - DvMF_1060 0.47 +0.2
1,301,314 - DvMF_1060 0.54 +0.5
1,301,505 + DvMF_1060 0.64 +1.3
1,301,505 + DvMF_1060 0.64 +1.2
1,301,505 + DvMF_1060 0.64 +0.6
1,301,976 + DvMF_1060 0.87 +0.6
1,302,034 + +0.7
1,302,211 - -0.2
1,302,316 + +0.2
1,302,354 + +0.1
1,302,373 + +0.4
1,302,650 - DvMF_1061 0.48 +0.6
1,302,717 - DvMF_1061 0.69 +0.1
1,302,742 - DvMF_1061 0.77 +0.8
1,302,781 + DvMF_1061 0.90 +1.0
1,302,838 + -0.8

Or see this region's nucleotide sequence