Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0884

Experiment: 5 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0883 and DvMF_0884 are separated by 227 nucleotidesDvMF_0884 and DvMF_0885 are separated by 323 nucleotides DvMF_0883: DvMF_0883 - 3'-5' exonuclease (RefSeq), at 1,065,847 to 1,066,452 _0883 DvMF_0884: DvMF_0884 - no description, at 1,066,680 to 1,067,967 _0884 DvMF_0885: DvMF_0885 - nitrite and sulphite reductase 4Fe-4S region (RefSeq), at 1,068,291 to 1,069,094 _0885 Position (kb) 1066 1067 1068Strain fitness (log2 ratio) -1 0 1at 1065.890 kb on - strandat 1066.156 kb on + strand, within DvMF_0883at 1066.818 kb on + strand, within DvMF_0884at 1066.825 kb on + strand, within DvMF_0884at 1066.825 kb on + strand, within DvMF_0884at 1066.826 kb on - strand, within DvMF_0884at 1066.833 kb on - strand, within DvMF_0884at 1066.833 kb on - strand, within DvMF_0884at 1066.849 kb on + strand, within DvMF_0884at 1067.076 kb on + strand, within DvMF_0884at 1067.293 kb on + strand, within DvMF_0884at 1067.388 kb on - strand, within DvMF_0884at 1067.490 kb on + strand, within DvMF_0884at 1067.539 kb on + strand, within DvMF_0884at 1067.571 kb on + strand, within DvMF_0884at 1067.811 kb on - strand, within DvMF_0884at 1068.156 kb on - strandat 1068.486 kb on - strand, within DvMF_0885at 1068.498 kb on - strand, within DvMF_0885

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 37C
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1,065,890 - -0.5
1,066,156 + DvMF_0883 0.51 -0.6
1,066,818 + DvMF_0884 0.11 +1.5
1,066,825 + DvMF_0884 0.11 +0.5
1,066,825 + DvMF_0884 0.11 -0.6
1,066,826 - DvMF_0884 0.11 +0.2
1,066,833 - DvMF_0884 0.12 +0.4
1,066,833 - DvMF_0884 0.12 -0.6
1,066,849 + DvMF_0884 0.13 +0.7
1,067,076 + DvMF_0884 0.31 +0.1
1,067,293 + DvMF_0884 0.48 +1.0
1,067,388 - DvMF_0884 0.55 +0.9
1,067,490 + DvMF_0884 0.63 +0.3
1,067,539 + DvMF_0884 0.67 +1.7
1,067,571 + DvMF_0884 0.69 +1.3
1,067,811 - DvMF_0884 0.88 +0.2
1,068,156 - +0.2
1,068,486 - DvMF_0885 0.24 +0.3
1,068,498 - DvMF_0885 0.26 +1.4

Or see this region's nucleotide sequence