Experiment: 5 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0779 and DvMF_0780 are separated by 170 nucleotides DvMF_0780 and DvMF_R0022 are separated by 374 nucleotides DvMF_R0022 and DvMF_0781 are separated by 448 nucleotides
DvMF_0779: DvMF_0779 - PBS lyase HEAT domain protein repeat-containing protein (RefSeq), at 934,164 to 936,089
_0779
DvMF_0780: DvMF_0780 - response regulator receiver modulated CheB methylesterase (RefSeq), at 936,260 to 937,402
_0780
DvMF_R0022: DvMF_R0022 - tRNA-Pro (RefSeq), at 937,777 to 937,854
_R0022
DvMF_0781: DvMF_0781 - NLP/P60 protein (RefSeq), at 938,303 to 939,085
_0781
Position (kb) 936
937
938 Strain fitness (log2 ratio) -2
-1
0
1
2 at 935.437 kb on + strand, within DvMF_0779 at 935.445 kb on - strand, within DvMF_0779 at 935.509 kb on + strand, within DvMF_0779 at 935.517 kb on - strand, within DvMF_0779 at 935.607 kb on - strand, within DvMF_0779 at 935.639 kb on - strand, within DvMF_0779 at 935.675 kb on + strand, within DvMF_0779 at 935.703 kb on - strand, within DvMF_0779 at 936.325 kb on + strand at 936.342 kb on + strand at 936.485 kb on - strand, within DvMF_0780 at 936.519 kb on + strand, within DvMF_0780 at 936.519 kb on + strand, within DvMF_0780 at 936.527 kb on - strand, within DvMF_0780 at 936.722 kb on - strand, within DvMF_0780 at 936.725 kb on - strand, within DvMF_0780 at 936.863 kb on - strand, within DvMF_0780 at 937.082 kb on - strand, within DvMF_0780 at 937.115 kb on + strand, within DvMF_0780 at 937.152 kb on - strand, within DvMF_0780 at 937.166 kb on - strand, within DvMF_0780 at 937.288 kb on + strand at 937.536 kb on + strand at 937.937 kb on + strand at 938.030 kb on + strand at 938.046 kb on + strand at 938.074 kb on - strand at 938.261 kb on - strand at 938.380 kb on + strand at 938.384 kb on - strand, within DvMF_0781 at 938.389 kb on - strand, within DvMF_0781
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 37C remove 935,437 + DvMF_0779 0.66 +0.6 935,445 - DvMF_0779 0.67 -1.1 935,509 + DvMF_0779 0.70 +0.6 935,517 - DvMF_0779 0.70 +0.4 935,607 - DvMF_0779 0.75 +0.2 935,639 - DvMF_0779 0.77 -0.0 935,675 + DvMF_0779 0.78 +2.2 935,703 - DvMF_0779 0.80 +0.7 936,325 + -0.4 936,342 + -1.2 936,485 - DvMF_0780 0.20 -0.9 936,519 + DvMF_0780 0.23 -0.7 936,519 + DvMF_0780 0.23 -0.5 936,527 - DvMF_0780 0.23 +0.3 936,722 - DvMF_0780 0.40 -2.6 936,725 - DvMF_0780 0.41 -0.9 936,863 - DvMF_0780 0.53 -0.2 937,082 - DvMF_0780 0.72 +0.3 937,115 + DvMF_0780 0.75 -0.6 937,152 - DvMF_0780 0.78 -0.6 937,166 - DvMF_0780 0.79 -1.7 937,288 + -1.3 937,536 + +0.3 937,937 + +1.1 938,030 + -0.2 938,046 + -0.0 938,074 - +0.1 938,261 - +0.6 938,380 + +1.5 938,384 - DvMF_0781 0.10 +0.3 938,389 - DvMF_0781 0.11 +0.1
Or see this region's nucleotide sequence