Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0398

Experiment: 5 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0397 and DvMF_0398 are separated by 423 nucleotidesDvMF_0398 and DvMF_0399 are separated by 160 nucleotides DvMF_0397: DvMF_0397 - protein of unknown function DUF224 cysteine-rich region domain protein (RefSeq), at 467,879 to 468,640 _0397 DvMF_0398: DvMF_0398 - short-chain dehydrogenase/reductase SDR (RefSeq), at 469,064 to 469,867 _0398 DvMF_0399: DvMF_0399 - multiple antibiotic resistance (MarC)-related protein (RefSeq), at 470,028 to 470,630 _0399 Position (kb) 469 470Strain fitness (log2 ratio) -1 0 1at 468.414 kb on + strand, within DvMF_0397at 468.519 kb on - strand, within DvMF_0397at 468.530 kb on + strand, within DvMF_0397at 468.593 kb on - strandat 468.803 kb on - strandat 468.951 kb on + strandat 468.959 kb on - strandat 468.961 kb on + strandat 469.567 kb on - strand, within DvMF_0398at 469.780 kb on + strand, within DvMF_0398at 469.788 kb on - strandat 469.933 kb on + strandat 469.936 kb on - strandat 469.954 kb on - strandat 470.116 kb on - strand, within DvMF_0399at 470.678 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 37C
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468,414 + DvMF_0397 0.70 +1.3
468,519 - DvMF_0397 0.84 +0.4
468,530 + DvMF_0397 0.85 +0.7
468,593 - +0.6
468,803 - +0.7
468,951 + +1.3
468,959 - +0.6
468,961 + +0.9
469,567 - DvMF_0398 0.63 +0.7
469,780 + DvMF_0398 0.89 +0.6
469,788 - +0.9
469,933 + +0.7
469,936 - +0.5
469,954 - +0.4
470,116 - DvMF_0399 0.15 -0.4
470,678 + +0.5

Or see this region's nucleotide sequence