Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0108

Experiment: 5 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0107 and DvMF_0108 overlap by 4 nucleotidesDvMF_0108 and DvMF_R0008 are separated by 325 nucleotidesDvMF_R0008 and DvMF_0109 are separated by 80 nucleotides DvMF_0107: DvMF_0107 - selenide, water dikinase (RefSeq), at 115,303 to 116,355 _0107 DvMF_0108: DvMF_0108 - transcriptional regulator, LysR family (RefSeq), at 116,352 to 117,314 _0108 DvMF_R0008: DvMF_R0008 - tRNA-Leu (RefSeq), at 117,640 to 117,724 _R0008 DvMF_0109: DvMF_0109 - trigger factor (RefSeq), at 117,805 to 119,103 _0109 Position (kb) 116 117 118Strain fitness (log2 ratio) -1 0 1at 115.611 kb on - strand, within DvMF_0107at 115.622 kb on - strand, within DvMF_0107at 115.752 kb on + strand, within DvMF_0107at 116.228 kb on + strand, within DvMF_0107at 116.237 kb on - strand, within DvMF_0107at 116.290 kb on + strandat 116.321 kb on + strandat 116.428 kb on - strandat 116.462 kb on - strand, within DvMF_0108at 116.624 kb on - strand, within DvMF_0108at 116.929 kb on - strand, within DvMF_0108at 116.964 kb on + strand, within DvMF_0108at 117.101 kb on + strand, within DvMF_0108at 117.101 kb on + strand, within DvMF_0108at 117.144 kb on - strand, within DvMF_0108at 117.242 kb on - strandat 117.410 kb on + strandat 117.508 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 37C
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115,611 - DvMF_0107 0.29 +1.1
115,622 - DvMF_0107 0.30 +0.4
115,752 + DvMF_0107 0.43 +0.9
116,228 + DvMF_0107 0.88 +0.9
116,237 - DvMF_0107 0.89 +0.7
116,290 + -1.4
116,321 + +0.4
116,428 - +0.5
116,462 - DvMF_0108 0.11 +0.1
116,624 - DvMF_0108 0.28 +0.3
116,929 - DvMF_0108 0.60 +0.5
116,964 + DvMF_0108 0.64 +0.3
117,101 + DvMF_0108 0.78 -0.3
117,101 + DvMF_0108 0.78 +0.3
117,144 - DvMF_0108 0.82 +0.3
117,242 - +0.4
117,410 + +1.1
117,508 - +0.1

Or see this region's nucleotide sequence