Experiment: LB no stress 48 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6041 and Pf6N2E2_6042 are separated by 127 nucleotides Pf6N2E2_6042 and Pf6N2E2_6043 are separated by 723 nucleotides Pf6N2E2_6043 and Pf6N2E2_6044 are separated by 499 nucleotides
Pf6N2E2_6041 - hypothetical protein, at 6,861,169 to 6,861,792
_6041
Pf6N2E2_6042 - hypothetical protein, at 6,861,920 to 6,862,060
_6042
Pf6N2E2_6043 - hypothetical protein, at 6,862,784 to 6,863,062
_6043
Pf6N2E2_6044 - Sensor histidine kinase/response regulator, at 6,863,562 to 6,865,652
_6044
Position (kb)
6862
6863
6864 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 6861.790 kb on + strand at 6861.921 kb on + strand at 6861.921 kb on + strand at 6861.921 kb on + strand at 6861.921 kb on + strand at 6861.921 kb on + strand at 6861.923 kb on + strand at 6861.923 kb on + strand at 6861.923 kb on + strand at 6861.923 kb on + strand at 6862.118 kb on - strand at 6862.167 kb on - strand at 6862.167 kb on - strand at 6862.201 kb on + strand at 6862.216 kb on - strand at 6862.216 kb on - strand at 6862.261 kb on - strand at 6862.261 kb on - strand at 6862.261 kb on - strand at 6862.299 kb on + strand at 6862.299 kb on + strand at 6862.299 kb on + strand at 6862.440 kb on - strand at 6862.542 kb on + strand at 6862.542 kb on + strand at 6862.542 kb on + strand at 6862.543 kb on - strand at 6862.543 kb on - strand at 6862.544 kb on + strand at 6862.544 kb on + strand at 6862.544 kb on + strand at 6862.545 kb on - strand at 6862.545 kb on - strand at 6862.551 kb on + strand at 6862.551 kb on + strand at 6862.577 kb on + strand at 6862.644 kb on + strand at 6862.645 kb on - strand at 6862.785 kb on + strand at 6863.062 kb on + strand at 6863.063 kb on - strand at 6863.063 kb on - strand at 6863.063 kb on - strand at 6863.063 kb on - strand at 6863.066 kb on + strand at 6863.066 kb on + strand at 6863.067 kb on - strand at 6863.067 kb on - strand at 6863.136 kb on + strand at 6863.137 kb on - strand at 6863.195 kb on - strand at 6863.199 kb on - strand at 6863.232 kb on + strand at 6863.232 kb on + strand at 6863.233 kb on - strand at 6863.233 kb on - strand at 6863.239 kb on + strand at 6863.240 kb on - strand at 6863.240 kb on - strand at 6863.240 kb on - strand at 6863.240 kb on - strand at 6863.240 kb on - strand at 6863.249 kb on + strand at 6863.262 kb on + strand at 6863.263 kb on - strand at 6863.289 kb on + strand at 6863.289 kb on + strand at 6863.303 kb on - strand at 6863.307 kb on + strand at 6863.308 kb on - strand at 6863.390 kb on + strand at 6863.413 kb on + strand at 6863.413 kb on + strand at 6863.413 kb on + strand at 6863.414 kb on - strand at 6863.643 kb on + strand at 6863.643 kb on + strand at 6863.643 kb on + strand at 6863.644 kb on - strand at 6863.644 kb on - strand at 6863.644 kb on - strand at 6863.777 kb on + strand, within Pf6N2E2_6044 at 6863.778 kb on - strand, within Pf6N2E2_6044 at 6863.779 kb on + strand, within Pf6N2E2_6044 at 6863.829 kb on + strand, within Pf6N2E2_6044 at 6863.829 kb on + strand, within Pf6N2E2_6044 at 6863.829 kb on + strand, within Pf6N2E2_6044 at 6863.829 kb on + strand, within Pf6N2E2_6044 at 6863.829 kb on + strand, within Pf6N2E2_6044 at 6863.830 kb on - strand, within Pf6N2E2_6044 at 6863.830 kb on - strand, within Pf6N2E2_6044 at 6863.845 kb on - strand, within Pf6N2E2_6044 at 6863.845 kb on - strand, within Pf6N2E2_6044 at 6864.048 kb on + strand, within Pf6N2E2_6044
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress 48 hours remove 6,861,790 + +0.6 6,861,921 + +0.3 6,861,921 + -1.1 6,861,921 + -0.3 6,861,921 + +0.8 6,861,921 + +1.7 6,861,923 + +1.6 6,861,923 + -2.6 6,861,923 + +1.2 6,861,923 + -0.9 6,862,118 - +1.3 6,862,167 - -2.1 6,862,167 - +0.9 6,862,201 + +0.8 6,862,216 - +0.7 6,862,216 - +0.0 6,862,261 - +0.8 6,862,261 - +1.4 6,862,261 - +0.5 6,862,299 + +1.2 6,862,299 + -2.9 6,862,299 + -0.6 6,862,440 - +2.2 6,862,542 + +0.9 6,862,542 + +1.2 6,862,542 + -1.4 6,862,543 - -0.1 6,862,543 - +1.0 6,862,544 + -0.4 6,862,544 + -0.5 6,862,544 + -1.3 6,862,545 - +0.4 6,862,545 - -0.6 6,862,551 + +1.8 6,862,551 + +1.1 6,862,577 + +1.3 6,862,644 + -1.3 6,862,645 - -1.0 6,862,785 + -0.9 6,863,062 + +0.7 6,863,063 - -0.7 6,863,063 - -1.0 6,863,063 - +0.7 6,863,063 - -1.5 6,863,066 + -0.1 6,863,066 + +0.6 6,863,067 - +0.4 6,863,067 - -2.4 6,863,136 + +0.5 6,863,137 - +0.7 6,863,195 - +0.2 6,863,199 - +2.2 6,863,232 + +2.2 6,863,232 + +1.2 6,863,233 - -1.5 6,863,233 - -1.0 6,863,239 + +0.3 6,863,240 - -0.6 6,863,240 - -2.1 6,863,240 - -0.6 6,863,240 - +0.0 6,863,240 - +3.5 6,863,249 + +0.0 6,863,262 + +0.2 6,863,263 - -1.5 6,863,289 + +1.2 6,863,289 + +1.8 6,863,303 - -0.7 6,863,307 + +0.2 6,863,308 - +1.2 6,863,390 + +2.8 6,863,413 + -1.3 6,863,413 + +0.5 6,863,413 + +0.5 6,863,414 - +0.4 6,863,643 + -0.1 6,863,643 + -1.4 6,863,643 + -1.6 6,863,644 - +0.8 6,863,644 - -0.8 6,863,644 - -0.6 6,863,777 + Pf6N2E2_6044 0.10 -0.6 6,863,778 - Pf6N2E2_6044 0.10 -0.3 6,863,779 + Pf6N2E2_6044 0.10 +0.4 6,863,829 + Pf6N2E2_6044 0.13 +0.6 6,863,829 + Pf6N2E2_6044 0.13 -1.0 6,863,829 + Pf6N2E2_6044 0.13 -0.8 6,863,829 + Pf6N2E2_6044 0.13 -1.0 6,863,829 + Pf6N2E2_6044 0.13 -0.6 6,863,830 - Pf6N2E2_6044 0.13 +1.9 6,863,830 - Pf6N2E2_6044 0.13 +0.2 6,863,845 - Pf6N2E2_6044 0.14 -0.6 6,863,845 - Pf6N2E2_6044 0.14 +1.2 6,864,048 + Pf6N2E2_6044 0.23 -1.3
Or see this region's nucleotide sequence