Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5057

Experiment: LB no stress 48 hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5056 and Pf6N2E2_5057 are separated by 61 nucleotidesPf6N2E2_5057 and Pf6N2E2_5058 are separated by 36 nucleotides Pf6N2E2_5056 - Hexuronate transporter, at 5,830,815 to 5,832,152 _5056 Pf6N2E2_5057 - hypothetical protein, at 5,832,214 to 5,832,387 _5057 Pf6N2E2_5058 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 5,832,424 to 5,834,325 _5058 Position (kb) 5832 5833Strain fitness (log2 ratio) -2 -1 0 1 2at 5831.266 kb on + strand, within Pf6N2E2_5056at 5831.317 kb on + strand, within Pf6N2E2_5056at 5831.317 kb on + strand, within Pf6N2E2_5056at 5831.317 kb on + strand, within Pf6N2E2_5056at 5831.318 kb on - strand, within Pf6N2E2_5056at 5831.318 kb on - strand, within Pf6N2E2_5056at 5831.318 kb on - strand, within Pf6N2E2_5056at 5831.347 kb on + strand, within Pf6N2E2_5056at 5831.348 kb on - strand, within Pf6N2E2_5056at 5831.348 kb on - strand, within Pf6N2E2_5056at 5831.348 kb on - strand, within Pf6N2E2_5056at 5831.353 kb on + strand, within Pf6N2E2_5056at 5831.353 kb on + strand, within Pf6N2E2_5056at 5831.353 kb on + strand, within Pf6N2E2_5056at 5831.353 kb on + strand, within Pf6N2E2_5056at 5831.354 kb on - strand, within Pf6N2E2_5056at 5831.354 kb on - strand, within Pf6N2E2_5056at 5831.354 kb on - strand, within Pf6N2E2_5056at 5831.354 kb on - strand, within Pf6N2E2_5056at 5831.354 kb on - strand, within Pf6N2E2_5056at 5831.354 kb on - strand, within Pf6N2E2_5056at 5831.473 kb on + strand, within Pf6N2E2_5056at 5831.473 kb on + strand, within Pf6N2E2_5056at 5831.473 kb on + strand, within Pf6N2E2_5056at 5831.474 kb on - strand, within Pf6N2E2_5056at 5831.474 kb on - strand, within Pf6N2E2_5056at 5831.521 kb on + strand, within Pf6N2E2_5056at 5831.522 kb on - strand, within Pf6N2E2_5056at 5831.663 kb on + strand, within Pf6N2E2_5056at 5831.664 kb on - strand, within Pf6N2E2_5056at 5831.868 kb on + strand, within Pf6N2E2_5056at 5831.869 kb on - strand, within Pf6N2E2_5056at 5831.936 kb on - strand, within Pf6N2E2_5056at 5832.007 kb on + strand, within Pf6N2E2_5056at 5832.007 kb on + strand, within Pf6N2E2_5056at 5832.007 kb on + strand, within Pf6N2E2_5056at 5832.007 kb on + strand, within Pf6N2E2_5056at 5832.008 kb on - strand, within Pf6N2E2_5056at 5832.008 kb on - strand, within Pf6N2E2_5056at 5832.008 kb on - strand, within Pf6N2E2_5056at 5832.152 kb on + strandat 5832.152 kb on + strandat 5832.152 kb on + strandat 5832.152 kb on + strandat 5832.153 kb on - strandat 5832.178 kb on + strandat 5832.178 kb on + strandat 5832.178 kb on + strandat 5832.178 kb on + strandat 5832.178 kb on + strandat 5832.179 kb on - strandat 5832.321 kb on + strand, within Pf6N2E2_5057at 5832.321 kb on + strand, within Pf6N2E2_5057at 5832.322 kb on - strand, within Pf6N2E2_5057at 5832.325 kb on + strand, within Pf6N2E2_5057at 5832.325 kb on + strand, within Pf6N2E2_5057at 5832.326 kb on - strand, within Pf6N2E2_5057at 5832.329 kb on - strand, within Pf6N2E2_5057at 5832.535 kb on + strandat 5832.535 kb on + strandat 5832.535 kb on + strandat 5832.535 kb on + strandat 5832.538 kb on + strandat 5832.538 kb on + strandat 5832.539 kb on - strandat 5832.814 kb on - strand, within Pf6N2E2_5058at 5832.814 kb on - strand, within Pf6N2E2_5058at 5832.852 kb on + strand, within Pf6N2E2_5058at 5832.852 kb on + strand, within Pf6N2E2_5058at 5832.853 kb on - strand, within Pf6N2E2_5058at 5832.853 kb on - strand, within Pf6N2E2_5058at 5832.853 kb on - strand, within Pf6N2E2_5058at 5832.853 kb on - strand, within Pf6N2E2_5058at 5832.856 kb on + strand, within Pf6N2E2_5058at 5832.856 kb on + strand, within Pf6N2E2_5058at 5832.856 kb on + strand, within Pf6N2E2_5058at 5832.856 kb on + strand, within Pf6N2E2_5058at 5832.857 kb on - strand, within Pf6N2E2_5058at 5832.857 kb on - strand, within Pf6N2E2_5058at 5832.857 kb on - strand, within Pf6N2E2_5058at 5832.857 kb on - strand, within Pf6N2E2_5058at 5833.210 kb on + strand, within Pf6N2E2_5058at 5833.210 kb on + strand, within Pf6N2E2_5058at 5833.211 kb on - strand, within Pf6N2E2_5058at 5833.304 kb on - strand, within Pf6N2E2_5058

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress 48 hours
remove
5,831,266 + Pf6N2E2_5056 0.34 +0.9
5,831,317 + Pf6N2E2_5056 0.38 -1.6
5,831,317 + Pf6N2E2_5056 0.38 +0.5
5,831,317 + Pf6N2E2_5056 0.38 +0.5
5,831,318 - Pf6N2E2_5056 0.38 -0.6
5,831,318 - Pf6N2E2_5056 0.38 +0.5
5,831,318 - Pf6N2E2_5056 0.38 +0.0
5,831,347 + Pf6N2E2_5056 0.40 -0.8
5,831,348 - Pf6N2E2_5056 0.40 +1.1
5,831,348 - Pf6N2E2_5056 0.40 -0.2
5,831,348 - Pf6N2E2_5056 0.40 +0.4
5,831,353 + Pf6N2E2_5056 0.40 +0.8
5,831,353 + Pf6N2E2_5056 0.40 +1.1
5,831,353 + Pf6N2E2_5056 0.40 +2.4
5,831,353 + Pf6N2E2_5056 0.40 -0.6
5,831,354 - Pf6N2E2_5056 0.40 +0.4
5,831,354 - Pf6N2E2_5056 0.40 +1.0
5,831,354 - Pf6N2E2_5056 0.40 +0.4
5,831,354 - Pf6N2E2_5056 0.40 +0.7
5,831,354 - Pf6N2E2_5056 0.40 +0.8
5,831,354 - Pf6N2E2_5056 0.40 -0.2
5,831,473 + Pf6N2E2_5056 0.49 +0.3
5,831,473 + Pf6N2E2_5056 0.49 -1.1
5,831,473 + Pf6N2E2_5056 0.49 +1.6
5,831,474 - Pf6N2E2_5056 0.49 +0.4
5,831,474 - Pf6N2E2_5056 0.49 -1.3
5,831,521 + Pf6N2E2_5056 0.53 +0.1
5,831,522 - Pf6N2E2_5056 0.53 -0.0
5,831,663 + Pf6N2E2_5056 0.63 -0.2
5,831,664 - Pf6N2E2_5056 0.63 -0.1
5,831,868 + Pf6N2E2_5056 0.79 +0.9
5,831,869 - Pf6N2E2_5056 0.79 +1.0
5,831,936 - Pf6N2E2_5056 0.84 +0.9
5,832,007 + Pf6N2E2_5056 0.89 -1.3
5,832,007 + Pf6N2E2_5056 0.89 +0.2
5,832,007 + Pf6N2E2_5056 0.89 -1.4
5,832,007 + Pf6N2E2_5056 0.89 +0.5
5,832,008 - Pf6N2E2_5056 0.89 -0.2
5,832,008 - Pf6N2E2_5056 0.89 +0.5
5,832,008 - Pf6N2E2_5056 0.89 +0.1
5,832,152 + +0.5
5,832,152 + +0.2
5,832,152 + +1.0
5,832,152 + +0.6
5,832,153 - -0.2
5,832,178 + +0.4
5,832,178 + +0.1
5,832,178 + -0.5
5,832,178 + +0.6
5,832,178 + +0.5
5,832,179 - +0.0
5,832,321 + Pf6N2E2_5057 0.61 -1.5
5,832,321 + Pf6N2E2_5057 0.61 -1.0
5,832,322 - Pf6N2E2_5057 0.62 -0.9
5,832,325 + Pf6N2E2_5057 0.64 -2.7
5,832,325 + Pf6N2E2_5057 0.64 -0.2
5,832,326 - Pf6N2E2_5057 0.64 +0.1
5,832,329 - Pf6N2E2_5057 0.66 -0.4
5,832,535 + -0.3
5,832,535 + +0.5
5,832,535 + -0.9
5,832,535 + +0.1
5,832,538 + +0.6
5,832,538 + -0.4
5,832,539 - -1.6
5,832,814 - Pf6N2E2_5058 0.21 +0.1
5,832,814 - Pf6N2E2_5058 0.21 +0.7
5,832,852 + Pf6N2E2_5058 0.23 -0.1
5,832,852 + Pf6N2E2_5058 0.23 +0.3
5,832,853 - Pf6N2E2_5058 0.23 +1.3
5,832,853 - Pf6N2E2_5058 0.23 +0.7
5,832,853 - Pf6N2E2_5058 0.23 +2.6
5,832,853 - Pf6N2E2_5058 0.23 +0.6
5,832,856 + Pf6N2E2_5058 0.23 +1.1
5,832,856 + Pf6N2E2_5058 0.23 +1.1
5,832,856 + Pf6N2E2_5058 0.23 +1.1
5,832,856 + Pf6N2E2_5058 0.23 +1.7
5,832,857 - Pf6N2E2_5058 0.23 +0.3
5,832,857 - Pf6N2E2_5058 0.23 +0.8
5,832,857 - Pf6N2E2_5058 0.23 -0.4
5,832,857 - Pf6N2E2_5058 0.23 +0.4
5,833,210 + Pf6N2E2_5058 0.41 -0.1
5,833,210 + Pf6N2E2_5058 0.41 -0.5
5,833,211 - Pf6N2E2_5058 0.41 -0.6
5,833,304 - Pf6N2E2_5058 0.46 -0.8

Or see this region's nucleotide sequence