Experiment: LB no stress 48 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3738 and Pf6N2E2_3739 overlap by 4 nucleotides Pf6N2E2_3739 and Pf6N2E2_3740 overlap by 4 nucleotides Pf6N2E2_3740 and Pf6N2E2_3741 overlap by 8 nucleotides Pf6N2E2_3741 and Pf6N2E2_3742 overlap by 8 nucleotides
Pf6N2E2_3738 - General secretion pathway protein L, at 4,354,377 to 4,355,480
_3738
Pf6N2E2_3739 - General secretion pathway protein K, at 4,355,477 to 4,356,325
_3739
Pf6N2E2_3740 - General secretion pathway protein J, at 4,356,322 to 4,356,855
_3740
Pf6N2E2_3741 - General secretion pathway protein I, at 4,356,848 to 4,357,234
_3741
Pf6N2E2_3742 - General secretion pathway protein H, at 4,357,227 to 4,357,694
_3742
Position (kb)
4355
4356
4357 Strain fitness (log2 ratio)
-1
0
1
2 at 4354.727 kb on - strand, within Pf6N2E2_3738 at 4354.727 kb on - strand, within Pf6N2E2_3738 at 4354.791 kb on + strand, within Pf6N2E2_3738 at 4354.792 kb on - strand, within Pf6N2E2_3738 at 4355.100 kb on + strand, within Pf6N2E2_3738 at 4355.100 kb on + strand, within Pf6N2E2_3738 at 4355.464 kb on + strand at 4355.798 kb on - strand, within Pf6N2E2_3739 at 4355.933 kb on + strand, within Pf6N2E2_3739 at 4356.010 kb on + strand, within Pf6N2E2_3739 at 4356.010 kb on + strand, within Pf6N2E2_3739 at 4356.011 kb on - strand, within Pf6N2E2_3739 at 4356.110 kb on + strand, within Pf6N2E2_3739 at 4356.111 kb on - strand, within Pf6N2E2_3739 at 4356.128 kb on + strand, within Pf6N2E2_3739 at 4356.129 kb on - strand, within Pf6N2E2_3739 at 4356.143 kb on + strand, within Pf6N2E2_3739 at 4356.144 kb on - strand, within Pf6N2E2_3739 at 4356.144 kb on - strand, within Pf6N2E2_3739 at 4356.455 kb on - strand, within Pf6N2E2_3740 at 4356.455 kb on - strand, within Pf6N2E2_3740 at 4356.455 kb on - strand, within Pf6N2E2_3740 at 4356.475 kb on + strand, within Pf6N2E2_3740 at 4356.475 kb on + strand, within Pf6N2E2_3740 at 4356.475 kb on + strand, within Pf6N2E2_3740 at 4356.476 kb on - strand, within Pf6N2E2_3740 at 4356.476 kb on - strand, within Pf6N2E2_3740 at 4356.615 kb on + strand, within Pf6N2E2_3740 at 4356.616 kb on - strand, within Pf6N2E2_3740 at 4356.849 kb on + strand at 4356.849 kb on + strand at 4356.849 kb on + strand at 4356.850 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress 48 hours remove 4,354,727 - Pf6N2E2_3738 0.32 +1.1 4,354,727 - Pf6N2E2_3738 0.32 -0.9 4,354,791 + Pf6N2E2_3738 0.38 -0.5 4,354,792 - Pf6N2E2_3738 0.38 +0.7 4,355,100 + Pf6N2E2_3738 0.65 -0.3 4,355,100 + Pf6N2E2_3738 0.65 -0.2 4,355,464 + -0.4 4,355,798 - Pf6N2E2_3739 0.38 +0.2 4,355,933 + Pf6N2E2_3739 0.54 +1.8 4,356,010 + Pf6N2E2_3739 0.63 +1.4 4,356,010 + Pf6N2E2_3739 0.63 +0.5 4,356,011 - Pf6N2E2_3739 0.63 +2.3 4,356,110 + Pf6N2E2_3739 0.75 -0.1 4,356,111 - Pf6N2E2_3739 0.75 -1.7 4,356,128 + Pf6N2E2_3739 0.77 +0.8 4,356,129 - Pf6N2E2_3739 0.77 +0.4 4,356,143 + Pf6N2E2_3739 0.78 +0.8 4,356,144 - Pf6N2E2_3739 0.79 -0.4 4,356,144 - Pf6N2E2_3739 0.79 +0.5 4,356,455 - Pf6N2E2_3740 0.25 -1.1 4,356,455 - Pf6N2E2_3740 0.25 -1.0 4,356,455 - Pf6N2E2_3740 0.25 -0.1 4,356,475 + Pf6N2E2_3740 0.29 +0.3 4,356,475 + Pf6N2E2_3740 0.29 +1.0 4,356,475 + Pf6N2E2_3740 0.29 -1.0 4,356,476 - Pf6N2E2_3740 0.29 -0.7 4,356,476 - Pf6N2E2_3740 0.29 +1.1 4,356,615 + Pf6N2E2_3740 0.55 -0.2 4,356,616 - Pf6N2E2_3740 0.55 -0.5 4,356,849 + -0.4 4,356,849 + +1.4 4,356,849 + +0.5 4,356,850 - -0.2
Or see this region's nucleotide sequence