Experiment: m.b. benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_912 and HP15_913 overlap by 22 nucleotides HP15_913 and HP15_914 overlap by 1 nucleotides
HP15_912: HP15_912 - type VI secretion system Vgr family protein, at 923,614 to 925,734
_912
HP15_913: HP15_913 - conserved hypothetical protein, at 925,713 to 926,525
_913
HP15_914: HP15_914 - peptidoglycan-binding LysM, at 926,525 to 928,642
_914
Position (kb) 925
926
927 Strain fitness (log2 ratio) -2
-1
0
1
2 at 924.714 kb on + strand, within HP15_912 at 924.778 kb on - strand, within HP15_912 at 924.856 kb on + strand, within HP15_912 at 924.856 kb on + strand, within HP15_912 at 924.884 kb on + strand, within HP15_912 at 924.922 kb on - strand, within HP15_912 at 924.972 kb on - strand, within HP15_912 at 925.003 kb on - strand, within HP15_912 at 925.194 kb on - strand, within HP15_912 at 925.444 kb on - strand, within HP15_912 at 925.454 kb on - strand, within HP15_912 at 925.480 kb on + strand, within HP15_912 at 925.501 kb on - strand, within HP15_912 at 925.728 kb on - strand at 925.885 kb on + strand, within HP15_913 at 925.885 kb on + strand, within HP15_913 at 925.893 kb on - strand, within HP15_913 at 925.893 kb on - strand, within HP15_913 at 925.896 kb on + strand, within HP15_913 at 925.912 kb on - strand, within HP15_913 at 925.919 kb on + strand, within HP15_913 at 925.961 kb on - strand, within HP15_913 at 925.979 kb on - strand, within HP15_913 at 926.017 kb on + strand, within HP15_913 at 926.089 kb on - strand, within HP15_913 at 926.130 kb on + strand, within HP15_913 at 926.130 kb on + strand, within HP15_913 at 926.392 kb on + strand, within HP15_913 at 926.392 kb on + strand, within HP15_913 at 926.410 kb on - strand, within HP15_913 at 926.423 kb on + strand, within HP15_913 at 926.466 kb on - strand at 926.483 kb on + strand at 926.491 kb on - strand at 926.573 kb on + strand at 926.599 kb on - strand at 926.599 kb on - strand at 926.599 kb on - strand at 926.644 kb on - strand at 926.733 kb on + strand at 926.874 kb on + strand, within HP15_914 at 926.882 kb on - strand, within HP15_914 at 926.895 kb on + strand, within HP15_914 at 926.895 kb on + strand, within HP15_914 at 926.903 kb on - strand, within HP15_914 at 926.990 kb on + strand, within HP15_914 at 926.998 kb on - strand, within HP15_914 at 927.159 kb on + strand, within HP15_914 at 927.167 kb on - strand, within HP15_914 at 927.289 kb on - strand, within HP15_914 at 927.304 kb on - strand, within HP15_914 at 927.326 kb on - strand, within HP15_914 at 927.350 kb on - strand, within HP15_914 at 927.405 kb on + strand, within HP15_914 at 927.470 kb on - strand, within HP15_914 at 927.470 kb on - strand, within HP15_914 at 927.478 kb on + strand, within HP15_914 at 927.486 kb on - strand, within HP15_914
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml remove 924,714 + HP15_912 0.52 -0.2 924,778 - HP15_912 0.55 -0.2 924,856 + HP15_912 0.59 -0.6 924,856 + HP15_912 0.59 +0.4 924,884 + HP15_912 0.60 +0.0 924,922 - HP15_912 0.62 +1.7 924,972 - HP15_912 0.64 -0.2 925,003 - HP15_912 0.65 -0.3 925,194 - HP15_912 0.74 -0.7 925,444 - HP15_912 0.86 +1.3 925,454 - HP15_912 0.87 -0.4 925,480 + HP15_912 0.88 +1.5 925,501 - HP15_912 0.89 -0.4 925,728 - -0.4 925,885 + HP15_913 0.21 +0.5 925,885 + HP15_913 0.21 +0.2 925,893 - HP15_913 0.22 +0.2 925,893 - HP15_913 0.22 -0.3 925,896 + HP15_913 0.23 -0.3 925,912 - HP15_913 0.24 +0.1 925,919 + HP15_913 0.25 +0.4 925,961 - HP15_913 0.31 +0.1 925,979 - HP15_913 0.33 +0.2 926,017 + HP15_913 0.37 +0.2 926,089 - HP15_913 0.46 -0.4 926,130 + HP15_913 0.51 +0.8 926,130 + HP15_913 0.51 +0.3 926,392 + HP15_913 0.84 +2.4 926,392 + HP15_913 0.84 +0.4 926,410 - HP15_913 0.86 +0.3 926,423 + HP15_913 0.87 -0.2 926,466 - -0.1 926,483 + -0.2 926,491 - -0.4 926,573 + +0.3 926,599 - -0.6 926,599 - -0.0 926,599 - +0.4 926,644 - -0.2 926,733 + +0.1 926,874 + HP15_914 0.16 +0.4 926,882 - HP15_914 0.17 +0.1 926,895 + HP15_914 0.17 +0.3 926,895 + HP15_914 0.17 -0.0 926,903 - HP15_914 0.18 -0.0 926,990 + HP15_914 0.22 +0.4 926,998 - HP15_914 0.22 -0.4 927,159 + HP15_914 0.30 +0.8 927,167 - HP15_914 0.30 +0.2 927,289 - HP15_914 0.36 -0.2 927,304 - HP15_914 0.37 +0.7 927,326 - HP15_914 0.38 +0.8 927,350 - HP15_914 0.39 -0.3 927,405 + HP15_914 0.42 +0.4 927,470 - HP15_914 0.45 +0.5 927,470 - HP15_914 0.45 -2.2 927,478 + HP15_914 0.45 -0.1 927,486 - HP15_914 0.45 -0.3
Or see this region's nucleotide sequence