Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06120 and PGA1_c06130 are separated by 200 nucleotides PGA1_c06130 and PGA1_c06140 are separated by 19 nucleotides
PGA1_c06120: PGA1_c06120 - Flp pilus assembly protein, ATPase CpaE, at 626,301 to 627,533
_c06120
PGA1_c06130: PGA1_c06130 - outer membrane protein OmpA-like protein, at 627,734 to 628,360
_c06130
PGA1_c06140: PGA1_c06140 - putative bacterial type II/III secretion system protein, at 628,380 to 629,834
_c06140
Position (kb) 627
628
629 Strain fitness (log2 ratio) -1
0
1
2
3 at 626.742 kb on - strand, within PGA1_c06120 at 626.800 kb on + strand, within PGA1_c06120 at 626.800 kb on + strand, within PGA1_c06120 at 626.819 kb on + strand, within PGA1_c06120 at 626.917 kb on - strand, within PGA1_c06120 at 626.917 kb on - strand, within PGA1_c06120 at 626.919 kb on + strand, within PGA1_c06120 at 626.919 kb on + strand, within PGA1_c06120 at 626.969 kb on - strand, within PGA1_c06120 at 627.050 kb on - strand, within PGA1_c06120 at 627.115 kb on - strand, within PGA1_c06120 at 627.117 kb on + strand, within PGA1_c06120 at 627.178 kb on + strand, within PGA1_c06120 at 627.216 kb on + strand, within PGA1_c06120 at 627.234 kb on + strand, within PGA1_c06120 at 627.239 kb on + strand, within PGA1_c06120 at 627.242 kb on - strand, within PGA1_c06120 at 627.338 kb on - strand, within PGA1_c06120 at 627.420 kb on - strand at 627.455 kb on + strand at 627.463 kb on - strand at 627.470 kb on + strand at 627.470 kb on + strand at 627.470 kb on + strand at 627.478 kb on - strand at 627.504 kb on + strand at 627.536 kb on + strand at 627.544 kb on - strand at 627.551 kb on - strand at 627.567 kb on - strand at 627.590 kb on + strand at 627.625 kb on - strand at 627.663 kb on - strand at 627.689 kb on - strand at 627.691 kb on + strand at 627.691 kb on + strand at 627.691 kb on + strand at 627.694 kb on - strand at 627.701 kb on + strand at 627.701 kb on + strand at 627.709 kb on - strand at 627.720 kb on - strand at 627.722 kb on + strand at 627.777 kb on + strand at 627.785 kb on - strand at 627.811 kb on + strand, within PGA1_c06130 at 627.982 kb on - strand, within PGA1_c06130 at 627.992 kb on + strand, within PGA1_c06130 at 628.000 kb on - strand, within PGA1_c06130 at 628.013 kb on + strand, within PGA1_c06130 at 628.136 kb on - strand, within PGA1_c06130 at 628.136 kb on - strand, within PGA1_c06130 at 628.157 kb on + strand, within PGA1_c06130 at 628.268 kb on + strand, within PGA1_c06130 at 628.268 kb on + strand, within PGA1_c06130 at 628.291 kb on - strand, within PGA1_c06130 at 628.291 kb on - strand, within PGA1_c06130 at 628.323 kb on + strand at 628.331 kb on - strand at 628.331 kb on - strand at 628.331 kb on - strand at 628.333 kb on + strand at 628.413 kb on + strand at 628.476 kb on - strand at 628.508 kb on - strand at 628.518 kb on + strand at 628.553 kb on - strand, within PGA1_c06140 at 628.613 kb on - strand, within PGA1_c06140 at 628.680 kb on + strand, within PGA1_c06140 at 628.680 kb on + strand, within PGA1_c06140 at 628.688 kb on - strand, within PGA1_c06140 at 628.701 kb on + strand, within PGA1_c06140 at 628.709 kb on - strand, within PGA1_c06140 at 628.735 kb on - strand, within PGA1_c06140 at 628.759 kb on + strand, within PGA1_c06140 at 628.843 kb on - strand, within PGA1_c06140 at 628.863 kb on + strand, within PGA1_c06140 at 628.890 kb on - strand, within PGA1_c06140 at 628.910 kb on - strand, within PGA1_c06140 at 628.926 kb on + strand, within PGA1_c06140 at 629.016 kb on - strand, within PGA1_c06140 at 629.053 kb on - strand, within PGA1_c06140 at 629.099 kb on - strand, within PGA1_c06140 at 629.128 kb on - strand, within PGA1_c06140 at 629.189 kb on + strand, within PGA1_c06140 at 629.214 kb on - strand, within PGA1_c06140 at 629.311 kb on - strand, within PGA1_c06140 at 629.353 kb on + strand, within PGA1_c06140
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 626,742 - PGA1_c06120 0.36 +0.7 626,800 + PGA1_c06120 0.40 +0.1 626,800 + PGA1_c06120 0.40 -0.4 626,819 + PGA1_c06120 0.42 +1.2 626,917 - PGA1_c06120 0.50 -1.3 626,917 - PGA1_c06120 0.50 +0.8 626,919 + PGA1_c06120 0.50 +0.3 626,919 + PGA1_c06120 0.50 -0.4 626,969 - PGA1_c06120 0.54 -0.1 627,050 - PGA1_c06120 0.61 -0.2 627,115 - PGA1_c06120 0.66 +1.6 627,117 + PGA1_c06120 0.66 +1.0 627,178 + PGA1_c06120 0.71 +1.2 627,216 + PGA1_c06120 0.74 +0.7 627,234 + PGA1_c06120 0.76 +0.8 627,239 + PGA1_c06120 0.76 +0.9 627,242 - PGA1_c06120 0.76 -0.1 627,338 - PGA1_c06120 0.84 +0.2 627,420 - +1.2 627,455 + -0.1 627,463 - +0.6 627,470 + +0.3 627,470 + +0.2 627,470 + +0.2 627,478 - -0.1 627,504 + +0.5 627,536 + +1.3 627,544 - -0.1 627,551 - +0.6 627,567 - +0.4 627,590 + +0.8 627,625 - +0.6 627,663 - +0.2 627,689 - +0.8 627,691 + -0.3 627,691 + -1.1 627,691 + +1.4 627,694 - +0.1 627,701 + -0.6 627,701 + +0.4 627,709 - +0.8 627,720 - -0.2 627,722 + +0.1 627,777 + +0.6 627,785 - +0.2 627,811 + PGA1_c06130 0.12 +0.5 627,982 - PGA1_c06130 0.40 +0.3 627,992 + PGA1_c06130 0.41 +0.7 628,000 - PGA1_c06130 0.42 -0.3 628,013 + PGA1_c06130 0.44 -1.2 628,136 - PGA1_c06130 0.64 -0.1 628,136 - PGA1_c06130 0.64 +0.2 628,157 + PGA1_c06130 0.67 +1.5 628,268 + PGA1_c06130 0.85 +1.0 628,268 + PGA1_c06130 0.85 -0.5 628,291 - PGA1_c06130 0.89 +0.4 628,291 - PGA1_c06130 0.89 +0.3 628,323 + +0.2 628,331 - +0.8 628,331 - -0.3 628,331 - +0.8 628,333 + +1.1 628,413 + +1.4 628,476 - +0.8 628,508 - +1.0 628,518 + +0.6 628,553 - PGA1_c06140 0.12 +0.0 628,613 - PGA1_c06140 0.16 +0.5 628,680 + PGA1_c06140 0.21 +0.8 628,680 + PGA1_c06140 0.21 +1.5 628,688 - PGA1_c06140 0.21 +0.4 628,701 + PGA1_c06140 0.22 -0.0 628,709 - PGA1_c06140 0.23 +0.2 628,735 - PGA1_c06140 0.24 +1.4 628,759 + PGA1_c06140 0.26 +1.5 628,843 - PGA1_c06140 0.32 +0.8 628,863 + PGA1_c06140 0.33 +0.3 628,890 - PGA1_c06140 0.35 +2.0 628,910 - PGA1_c06140 0.36 +0.4 628,926 + PGA1_c06140 0.38 +2.9 629,016 - PGA1_c06140 0.44 +1.0 629,053 - PGA1_c06140 0.46 +1.1 629,099 - PGA1_c06140 0.49 -0.1 629,128 - PGA1_c06140 0.51 +0.6 629,189 + PGA1_c06140 0.56 +0.7 629,214 - PGA1_c06140 0.57 +0.1 629,311 - PGA1_c06140 0.64 +1.3 629,353 + PGA1_c06140 0.67 +1.5
Or see this region's nucleotide sequence