Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04500

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04490 and PGA1_c04500 are separated by 94 nucleotidesPGA1_c04500 and PGA1_c04510 are separated by 47 nucleotidesPGA1_c04510 and PGA1_c04520 are separated by 294 nucleotides PGA1_c04490: PGA1_c04490 - indolepyruvate oxidoreductase, at 437,639 to 441,061 _c04490 PGA1_c04500: PGA1_c04500 - transcriptional regulator, AsnC family, at 441,156 to 441,671 _c04500 PGA1_c04510: PGA1_c04510 - Protein of unknown function (DUF3307)., at 441,719 to 442,111 _c04510 PGA1_c04520: PGA1_c04520 - putative ABC transporter cyclic nucleotide-binding protein, at 442,406 to 445,363 _c04520 Position (kb) 441 442Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 440.160 kb on - strand, within PGA1_c04490at 440.160 kb on - strand, within PGA1_c04490at 440.160 kb on - strand, within PGA1_c04490at 440.160 kb on - strand, within PGA1_c04490at 440.160 kb on - strand, within PGA1_c04490at 440.160 kb on - strand, within PGA1_c04490at 440.160 kb on - strand, within PGA1_c04490at 440.160 kb on - strand, within PGA1_c04490at 440.160 kb on - strand, within PGA1_c04490at 440.160 kb on - strand, within PGA1_c04490at 440.160 kb on - strand, within PGA1_c04490at 440.160 kb on - strand, within PGA1_c04490at 440.160 kb on - strand, within PGA1_c04490at 440.160 kb on - strand, within PGA1_c04490at 440.183 kb on - strand, within PGA1_c04490at 440.185 kb on + strand, within PGA1_c04490at 440.196 kb on + strand, within PGA1_c04490at 440.198 kb on - strand, within PGA1_c04490at 440.198 kb on - strand, within PGA1_c04490at 440.251 kb on - strand, within PGA1_c04490at 440.251 kb on - strand, within PGA1_c04490at 440.276 kb on + strand, within PGA1_c04490at 440.276 kb on + strand, within PGA1_c04490at 440.276 kb on + strand, within PGA1_c04490at 440.284 kb on - strand, within PGA1_c04490at 440.284 kb on - strand, within PGA1_c04490at 440.340 kb on - strand, within PGA1_c04490at 440.356 kb on + strand, within PGA1_c04490at 440.364 kb on - strand, within PGA1_c04490at 440.374 kb on + strand, within PGA1_c04490at 440.374 kb on + strand, within PGA1_c04490at 440.374 kb on + strand, within PGA1_c04490at 440.434 kb on - strand, within PGA1_c04490at 440.445 kb on + strand, within PGA1_c04490at 440.445 kb on + strand, within PGA1_c04490at 440.446 kb on + strand, within PGA1_c04490at 440.451 kb on + strand, within PGA1_c04490at 440.451 kb on + strand, within PGA1_c04490at 440.454 kb on - strand, within PGA1_c04490at 440.454 kb on - strand, within PGA1_c04490at 440.464 kb on + strand, within PGA1_c04490at 440.464 kb on + strand, within PGA1_c04490at 440.464 kb on + strand, within PGA1_c04490at 440.464 kb on + strand, within PGA1_c04490at 440.464 kb on + strand, within PGA1_c04490at 440.521 kb on + strand, within PGA1_c04490at 440.524 kb on + strand, within PGA1_c04490at 440.529 kb on - strand, within PGA1_c04490at 440.531 kb on + strand, within PGA1_c04490at 440.537 kb on - strand, within PGA1_c04490at 440.539 kb on - strand, within PGA1_c04490at 440.539 kb on - strand, within PGA1_c04490at 440.539 kb on - strand, within PGA1_c04490at 440.539 kb on - strand, within PGA1_c04490at 440.539 kb on - strand, within PGA1_c04490at 440.539 kb on - strand, within PGA1_c04490at 440.539 kb on - strand, within PGA1_c04490at 440.539 kb on - strand, within PGA1_c04490at 440.539 kb on - strand, within PGA1_c04490at 440.549 kb on - strand, within PGA1_c04490at 440.575 kb on + strand, within PGA1_c04490at 440.600 kb on + strand, within PGA1_c04490at 440.600 kb on + strand, within PGA1_c04490at 440.600 kb on + strand, within PGA1_c04490at 440.600 kb on + strand, within PGA1_c04490at 440.600 kb on + strand, within PGA1_c04490at 440.608 kb on - strand, within PGA1_c04490at 440.608 kb on - strand, within PGA1_c04490at 440.608 kb on - strand, within PGA1_c04490at 440.608 kb on - strand, within PGA1_c04490at 440.628 kb on + strand, within PGA1_c04490at 440.628 kb on + strand, within PGA1_c04490at 440.638 kb on + strand, within PGA1_c04490at 440.638 kb on + strand, within PGA1_c04490at 440.648 kb on + strand, within PGA1_c04490at 440.657 kb on - strand, within PGA1_c04490at 440.695 kb on - strand, within PGA1_c04490at 440.739 kb on - strandat 440.758 kb on - strandat 440.773 kb on + strandat 440.776 kb on - strandat 440.784 kb on + strandat 440.786 kb on + strandat 440.791 kb on + strandat 440.791 kb on + strandat 440.896 kb on - strandat 440.915 kb on + strandat 440.952 kb on + strandat 440.968 kb on + strandat 440.971 kb on + strandat 440.976 kb on - strandat 440.990 kb on + strandat 441.033 kb on - strandat 441.040 kb on + strandat 441.178 kb on - strandat 441.241 kb on + strand, within PGA1_c04500at 441.241 kb on + strand, within PGA1_c04500at 441.247 kb on + strand, within PGA1_c04500at 441.249 kb on - strand, within PGA1_c04500at 441.249 kb on - strand, within PGA1_c04500at 441.282 kb on + strand, within PGA1_c04500at 441.282 kb on + strand, within PGA1_c04500at 441.290 kb on - strand, within PGA1_c04500at 441.317 kb on - strand, within PGA1_c04500at 441.329 kb on + strand, within PGA1_c04500at 441.337 kb on + strand, within PGA1_c04500at 441.337 kb on + strand, within PGA1_c04500at 441.345 kb on - strand, within PGA1_c04500at 441.370 kb on - strand, within PGA1_c04500at 441.389 kb on + strand, within PGA1_c04500at 441.390 kb on - strand, within PGA1_c04500at 441.397 kb on - strand, within PGA1_c04500at 441.430 kb on - strand, within PGA1_c04500at 441.453 kb on - strand, within PGA1_c04500at 441.459 kb on + strand, within PGA1_c04500at 441.467 kb on - strand, within PGA1_c04500at 441.467 kb on - strand, within PGA1_c04500at 441.469 kb on + strand, within PGA1_c04500at 441.469 kb on + strand, within PGA1_c04500at 441.474 kb on + strand, within PGA1_c04500at 441.477 kb on - strand, within PGA1_c04500at 441.479 kb on + strand, within PGA1_c04500at 441.519 kb on - strand, within PGA1_c04500at 441.519 kb on - strand, within PGA1_c04500at 441.533 kb on - strand, within PGA1_c04500at 441.534 kb on - strand, within PGA1_c04500at 441.534 kb on - strand, within PGA1_c04500at 441.552 kb on + strand, within PGA1_c04500at 441.606 kb on - strand, within PGA1_c04500at 441.611 kb on - strand, within PGA1_c04500at 441.611 kb on - strand, within PGA1_c04500at 441.611 kb on - strand, within PGA1_c04500at 441.611 kb on - strand, within PGA1_c04500at 441.611 kb on - strand, within PGA1_c04500at 441.611 kb on - strand, within PGA1_c04500at 441.616 kb on - strand, within PGA1_c04500at 441.620 kb on + strandat 441.633 kb on - strandat 441.648 kb on - strandat 441.650 kb on - strandat 441.655 kb on + strandat 441.666 kb on + strandat 441.666 kb on + strandat 441.666 kb on + strandat 441.666 kb on + strandat 441.674 kb on - strandat 441.705 kb on - strandat 441.705 kb on - strandat 441.707 kb on + strandat 441.707 kb on + strandat 441.707 kb on + strandat 441.718 kb on - strandat 441.764 kb on + strand, within PGA1_c04510at 441.779 kb on + strand, within PGA1_c04510at 441.787 kb on - strand, within PGA1_c04510at 441.787 kb on - strand, within PGA1_c04510at 441.796 kb on + strand, within PGA1_c04510at 441.801 kb on + strand, within PGA1_c04510at 441.803 kb on + strand, within PGA1_c04510at 441.811 kb on - strand, within PGA1_c04510at 441.811 kb on - strand, within PGA1_c04510at 441.811 kb on - strand, within PGA1_c04510at 441.811 kb on - strand, within PGA1_c04510at 441.811 kb on - strand, within PGA1_c04510at 441.813 kb on + strand, within PGA1_c04510at 441.813 kb on + strand, within PGA1_c04510at 441.821 kb on - strand, within PGA1_c04510at 441.821 kb on - strand, within PGA1_c04510at 441.826 kb on - strand, within PGA1_c04510at 441.853 kb on - strand, within PGA1_c04510at 441.877 kb on + strand, within PGA1_c04510at 441.882 kb on + strand, within PGA1_c04510at 441.882 kb on + strand, within PGA1_c04510at 441.884 kb on + strand, within PGA1_c04510at 441.890 kb on - strand, within PGA1_c04510at 441.890 kb on - strand, within PGA1_c04510at 441.890 kb on - strand, within PGA1_c04510at 441.892 kb on - strand, within PGA1_c04510at 441.893 kb on - strand, within PGA1_c04510at 441.920 kb on - strand, within PGA1_c04510at 441.935 kb on - strand, within PGA1_c04510at 441.969 kb on - strand, within PGA1_c04510at 441.969 kb on - strand, within PGA1_c04510at 441.977 kb on - strand, within PGA1_c04510at 441.977 kb on - strand, within PGA1_c04510at 442.062 kb on + strand, within PGA1_c04510at 442.070 kb on - strand, within PGA1_c04510at 442.074 kb on - strandat 442.074 kb on - strandat 442.074 kb on - strandat 442.084 kb on - strandat 442.093 kb on - strandat 442.102 kb on + strandat 442.102 kb on + strandat 442.102 kb on + strandat 442.102 kb on + strandat 442.102 kb on + strandat 442.102 kb on + strandat 442.110 kb on - strandat 442.169 kb on + strandat 442.177 kb on + strandat 442.177 kb on - strandat 442.177 kb on - strandat 442.185 kb on - strandat 442.185 kb on - strandat 442.205 kb on + strandat 442.220 kb on + strandat 442.227 kb on - strandat 442.311 kb on + strandat 442.350 kb on + strandat 442.350 kb on + strandat 442.384 kb on + strandat 442.409 kb on + strandat 442.425 kb on - strandat 442.455 kb on + strandat 442.455 kb on - strandat 442.457 kb on - strandat 442.472 kb on - strandat 442.509 kb on + strandat 442.509 kb on + strandat 442.509 kb on + strandat 442.517 kb on - strandat 442.524 kb on + strandat 442.527 kb on - strandat 442.527 kb on - strandat 442.532 kb on - strandat 442.548 kb on + strandat 442.551 kb on - strandat 442.551 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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440,160 - PGA1_c04490 0.74 +1.2
440,160 - PGA1_c04490 0.74 +1.4
440,160 - PGA1_c04490 0.74 +1.6
440,160 - PGA1_c04490 0.74 +0.1
440,160 - PGA1_c04490 0.74 +2.0
440,160 - PGA1_c04490 0.74 +0.7
440,160 - PGA1_c04490 0.74 +0.7
440,160 - PGA1_c04490 0.74 +1.7
440,160 - PGA1_c04490 0.74 +0.9
440,160 - PGA1_c04490 0.74 +0.3
440,160 - PGA1_c04490 0.74 +1.3
440,160 - PGA1_c04490 0.74 -0.2
440,160 - PGA1_c04490 0.74 +0.9
440,160 - PGA1_c04490 0.74 +0.6
440,183 - PGA1_c04490 0.74 +0.7
440,185 + PGA1_c04490 0.74 +0.5
440,196 + PGA1_c04490 0.75 +1.7
440,198 - PGA1_c04490 0.75 +1.4
440,198 - PGA1_c04490 0.75 +0.6
440,251 - PGA1_c04490 0.76 +1.5
440,251 - PGA1_c04490 0.76 +0.8
440,276 + PGA1_c04490 0.77 +1.8
440,276 + PGA1_c04490 0.77 +0.8
440,276 + PGA1_c04490 0.77 +1.9
440,284 - PGA1_c04490 0.77 +1.8
440,284 - PGA1_c04490 0.77 +0.9
440,340 - PGA1_c04490 0.79 +1.2
440,356 + PGA1_c04490 0.79 +1.1
440,364 - PGA1_c04490 0.80 +0.9
440,374 + PGA1_c04490 0.80 +0.9
440,374 + PGA1_c04490 0.80 +1.4
440,374 + PGA1_c04490 0.80 +0.6
440,434 - PGA1_c04490 0.82 +2.5
440,445 + PGA1_c04490 0.82 +1.0
440,445 + PGA1_c04490 0.82 +0.2
440,446 + PGA1_c04490 0.82 +0.1
440,451 + PGA1_c04490 0.82 +1.0
440,451 + PGA1_c04490 0.82 +1.1
440,454 - PGA1_c04490 0.82 +0.5
440,454 - PGA1_c04490 0.82 +0.9
440,464 + PGA1_c04490 0.83 +1.3
440,464 + PGA1_c04490 0.83 +1.5
440,464 + PGA1_c04490 0.83 +1.2
440,464 + PGA1_c04490 0.83 +0.8
440,464 + PGA1_c04490 0.83 +0.4
440,521 + PGA1_c04490 0.84 +1.4
440,524 + PGA1_c04490 0.84 +1.6
440,529 - PGA1_c04490 0.84 +1.2
440,531 + PGA1_c04490 0.84 +1.8
440,537 - PGA1_c04490 0.85 +0.2
440,539 - PGA1_c04490 0.85 +2.1
440,539 - PGA1_c04490 0.85 +0.5
440,539 - PGA1_c04490 0.85 +0.4
440,539 - PGA1_c04490 0.85 +1.3
440,539 - PGA1_c04490 0.85 +1.5
440,539 - PGA1_c04490 0.85 +3.8
440,539 - PGA1_c04490 0.85 +0.1
440,539 - PGA1_c04490 0.85 +0.5
440,539 - PGA1_c04490 0.85 +0.9
440,549 - PGA1_c04490 0.85 +1.8
440,575 + PGA1_c04490 0.86 +1.0
440,600 + PGA1_c04490 0.87 +1.2
440,600 + PGA1_c04490 0.87 +0.0
440,600 + PGA1_c04490 0.87 +1.0
440,600 + PGA1_c04490 0.87 +1.6
440,600 + PGA1_c04490 0.87 +1.2
440,608 - PGA1_c04490 0.87 +3.3
440,608 - PGA1_c04490 0.87 +1.4
440,608 - PGA1_c04490 0.87 +1.3
440,608 - PGA1_c04490 0.87 +1.4
440,628 + PGA1_c04490 0.87 +2.1
440,628 + PGA1_c04490 0.87 +1.2
440,638 + PGA1_c04490 0.88 +1.8
440,638 + PGA1_c04490 0.88 +1.4
440,648 + PGA1_c04490 0.88 +1.2
440,657 - PGA1_c04490 0.88 +0.9
440,695 - PGA1_c04490 0.89 +0.9
440,739 - +0.7
440,758 - +0.6
440,773 + +0.8
440,776 - +0.7
440,784 + +0.9
440,786 + +1.3
440,791 + +0.4
440,791 + +1.3
440,896 - +0.7
440,915 + +0.9
440,952 + +1.5
440,968 + +0.2
440,971 + +0.7
440,976 - +1.5
440,990 + -0.1
441,033 - +1.4
441,040 + +1.0
441,178 - +1.7
441,241 + PGA1_c04500 0.16 +1.3
441,241 + PGA1_c04500 0.16 +0.6
441,247 + PGA1_c04500 0.18 +1.0
441,249 - PGA1_c04500 0.18 +1.0
441,249 - PGA1_c04500 0.18 +1.3
441,282 + PGA1_c04500 0.24 +1.2
441,282 + PGA1_c04500 0.24 +0.5
441,290 - PGA1_c04500 0.26 +2.5
441,317 - PGA1_c04500 0.31 +0.9
441,329 + PGA1_c04500 0.34 +0.7
441,337 + PGA1_c04500 0.35 +1.5
441,337 + PGA1_c04500 0.35 +2.2
441,345 - PGA1_c04500 0.37 +1.0
441,370 - PGA1_c04500 0.41 +0.9
441,389 + PGA1_c04500 0.45 +1.0
441,390 - PGA1_c04500 0.45 +0.6
441,397 - PGA1_c04500 0.47 +0.9
441,430 - PGA1_c04500 0.53 +1.1
441,453 - PGA1_c04500 0.58 +1.2
441,459 + PGA1_c04500 0.59 +0.7
441,467 - PGA1_c04500 0.60 +0.4
441,467 - PGA1_c04500 0.60 +0.9
441,469 + PGA1_c04500 0.61 +1.2
441,469 + PGA1_c04500 0.61 +1.4
441,474 + PGA1_c04500 0.62 +1.3
441,477 - PGA1_c04500 0.62 -0.2
441,479 + PGA1_c04500 0.63 +1.2
441,519 - PGA1_c04500 0.70 +1.2
441,519 - PGA1_c04500 0.70 +1.0
441,533 - PGA1_c04500 0.73 +1.0
441,534 - PGA1_c04500 0.73 +0.7
441,534 - PGA1_c04500 0.73 +2.4
441,552 + PGA1_c04500 0.77 +1.0
441,606 - PGA1_c04500 0.87 +1.8
441,611 - PGA1_c04500 0.88 +1.4
441,611 - PGA1_c04500 0.88 +0.9
441,611 - PGA1_c04500 0.88 +1.4
441,611 - PGA1_c04500 0.88 +0.6
441,611 - PGA1_c04500 0.88 +1.2
441,611 - PGA1_c04500 0.88 +0.5
441,616 - PGA1_c04500 0.89 +0.3
441,620 + +1.7
441,633 - +1.1
441,648 - -0.9
441,650 - +0.8
441,655 + +0.8
441,666 + +0.7
441,666 + +0.2
441,666 + +0.2
441,666 + -0.3
441,674 - -0.6
441,705 - +0.1
441,705 - -0.3
441,707 + +0.1
441,707 + -0.9
441,707 + -0.4
441,718 - -0.2
441,764 + PGA1_c04510 0.11 -0.7
441,779 + PGA1_c04510 0.15 -0.2
441,787 - PGA1_c04510 0.17 -0.2
441,787 - PGA1_c04510 0.17 -0.6
441,796 + PGA1_c04510 0.20 -2.6
441,801 + PGA1_c04510 0.21 +0.5
441,803 + PGA1_c04510 0.21 +1.3
441,811 - PGA1_c04510 0.23 +0.7
441,811 - PGA1_c04510 0.23 -0.7
441,811 - PGA1_c04510 0.23 -0.5
441,811 - PGA1_c04510 0.23 +0.7
441,811 - PGA1_c04510 0.23 -0.7
441,813 + PGA1_c04510 0.24 -0.1
441,813 + PGA1_c04510 0.24 +0.4
441,821 - PGA1_c04510 0.26 +0.1
441,821 - PGA1_c04510 0.26 +0.7
441,826 - PGA1_c04510 0.27 -0.9
441,853 - PGA1_c04510 0.34 -2.1
441,877 + PGA1_c04510 0.40 +1.1
441,882 + PGA1_c04510 0.41 -0.3
441,882 + PGA1_c04510 0.41 -0.6
441,884 + PGA1_c04510 0.42 -0.1
441,890 - PGA1_c04510 0.44 +0.4
441,890 - PGA1_c04510 0.44 -0.3
441,890 - PGA1_c04510 0.44 -0.3
441,892 - PGA1_c04510 0.44 +0.5
441,893 - PGA1_c04510 0.44 +0.4
441,920 - PGA1_c04510 0.51 +0.3
441,935 - PGA1_c04510 0.55 -0.9
441,969 - PGA1_c04510 0.64 -2.1
441,969 - PGA1_c04510 0.64 -0.9
441,977 - PGA1_c04510 0.66 +0.3
441,977 - PGA1_c04510 0.66 +0.4
442,062 + PGA1_c04510 0.87 +0.1
442,070 - PGA1_c04510 0.89 +1.0
442,074 - +0.2
442,074 - +0.3
442,074 - +0.7
442,084 - +0.2
442,093 - +0.3
442,102 + -0.7
442,102 + +0.8
442,102 + +0.6
442,102 + +0.3
442,102 + -0.9
442,102 + +0.9
442,110 - +0.7
442,169 + +0.2
442,177 + -0.4
442,177 - +0.1
442,177 - +0.2
442,185 - +0.6
442,185 - +0.4
442,205 + -0.9
442,220 + -0.5
442,227 - -0.8
442,311 + -0.5
442,350 + +0.2
442,350 + +0.2
442,384 + +0.0
442,409 + -0.8
442,425 - +1.0
442,455 + -0.0
442,455 - +0.2
442,457 - -0.5
442,472 - +1.0
442,509 + +0.1
442,509 + -0.2
442,509 + -0.3
442,517 - +1.2
442,524 + -0.2
442,527 - +0.5
442,527 - -0.5
442,532 - -0.8
442,548 + +0.8
442,551 - +0.2
442,551 - -0.1

Or see this region's nucleotide sequence