Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04020 and PGA1_c04030 are separated by 126 nucleotides PGA1_c04030 and PGA1_c04040 are separated by 62 nucleotides PGA1_c04040 and PGA1_c04050 are separated by 10 nucleotides PGA1_c04050 and PGA1_c04060 are separated by 122 nucleotides
PGA1_c04020: PGA1_c04020 - putative branched-chain-amino-acid aminotransferase, at 387,946 to 388,812
_c04020
PGA1_c04030: PGA1_c04030 - phenylacetic acid degradation protein paaA-like protein, at 388,939 to 389,706
_c04030
PGA1_c04040: PGA1_c04040 - phenylacetic acid degradation NADH oxidoreductase PaaE, at 389,769 to 390,842
_c04040
PGA1_c04050: PGA1_c04050 - phenylacetic acid degradation protein PaaD, at 390,853 to 391,326
_c04050
PGA1_c04060: PGA1_c04060 - phenylacetic acid degradation protein PaaC, at 391,449 to 392,222
_c04060
Position (kb) 389
390
391 Strain fitness (log2 ratio) -1
0
1
2 at 388.917 kb on - strand at 388.922 kb on - strand at 388.969 kb on - strand at 389.013 kb on + strand at 389.013 kb on + strand at 389.013 kb on + strand at 389.021 kb on - strand, within PGA1_c04030 at 389.021 kb on - strand, within PGA1_c04030 at 389.021 kb on - strand, within PGA1_c04030 at 389.033 kb on + strand, within PGA1_c04030 at 389.045 kb on + strand, within PGA1_c04030 at 389.064 kb on + strand, within PGA1_c04030 at 389.071 kb on + strand, within PGA1_c04030 at 389.168 kb on - strand, within PGA1_c04030 at 389.169 kb on - strand, within PGA1_c04030 at 389.194 kb on + strand, within PGA1_c04030 at 389.202 kb on - strand, within PGA1_c04030 at 389.202 kb on - strand, within PGA1_c04030 at 389.323 kb on - strand, within PGA1_c04030 at 389.343 kb on + strand, within PGA1_c04030 at 389.371 kb on + strand, within PGA1_c04030 at 389.379 kb on - strand, within PGA1_c04030 at 389.379 kb on - strand, within PGA1_c04030 at 389.390 kb on - strand, within PGA1_c04030 at 389.401 kb on - strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.456 kb on + strand, within PGA1_c04030 at 389.474 kb on + strand, within PGA1_c04030 at 389.516 kb on + strand, within PGA1_c04030 at 389.562 kb on + strand, within PGA1_c04030 at 389.619 kb on - strand, within PGA1_c04030 at 389.629 kb on - strand, within PGA1_c04030 at 389.648 kb on - strand at 389.717 kb on + strand at 389.723 kb on - strand at 389.725 kb on - strand at 389.806 kb on + strand at 389.819 kb on - strand at 389.820 kb on + strand at 389.820 kb on + strand at 389.826 kb on + strand at 389.828 kb on - strand at 389.828 kb on - strand at 389.828 kb on - strand at 389.833 kb on - strand at 389.834 kb on - strand at 389.882 kb on - strand, within PGA1_c04040 at 389.897 kb on - strand, within PGA1_c04040 at 389.919 kb on + strand, within PGA1_c04040 at 389.919 kb on - strand, within PGA1_c04040 at 389.934 kb on + strand, within PGA1_c04040 at 389.934 kb on + strand, within PGA1_c04040 at 389.942 kb on - strand, within PGA1_c04040 at 389.979 kb on + strand, within PGA1_c04040 at 389.980 kb on + strand, within PGA1_c04040 at 389.987 kb on - strand, within PGA1_c04040 at 389.988 kb on - strand, within PGA1_c04040 at 390.003 kb on + strand, within PGA1_c04040 at 390.011 kb on - strand, within PGA1_c04040 at 390.011 kb on - strand, within PGA1_c04040 at 390.034 kb on + strand, within PGA1_c04040 at 390.034 kb on + strand, within PGA1_c04040 at 390.034 kb on + strand, within PGA1_c04040 at 390.044 kb on + strand, within PGA1_c04040 at 390.052 kb on - strand, within PGA1_c04040 at 390.070 kb on + strand, within PGA1_c04040 at 390.070 kb on + strand, within PGA1_c04040 at 390.106 kb on + strand, within PGA1_c04040 at 390.114 kb on - strand, within PGA1_c04040 at 390.116 kb on + strand, within PGA1_c04040 at 390.153 kb on + strand, within PGA1_c04040 at 390.161 kb on - strand, within PGA1_c04040 at 390.161 kb on - strand, within PGA1_c04040 at 390.166 kb on - strand, within PGA1_c04040 at 390.171 kb on + strand, within PGA1_c04040 at 390.185 kb on + strand, within PGA1_c04040 at 390.193 kb on - strand, within PGA1_c04040 at 390.196 kb on - strand, within PGA1_c04040 at 390.237 kb on - strand, within PGA1_c04040 at 390.274 kb on + strand, within PGA1_c04040 at 390.274 kb on + strand, within PGA1_c04040 at 390.323 kb on + strand, within PGA1_c04040 at 390.323 kb on + strand, within PGA1_c04040 at 390.331 kb on - strand, within PGA1_c04040 at 390.337 kb on + strand, within PGA1_c04040 at 390.337 kb on + strand, within PGA1_c04040 at 390.337 kb on + strand, within PGA1_c04040 at 390.337 kb on + strand, within PGA1_c04040 at 390.345 kb on - strand, within PGA1_c04040 at 390.365 kb on - strand, within PGA1_c04040 at 390.365 kb on - strand, within PGA1_c04040 at 390.374 kb on + strand, within PGA1_c04040 at 390.400 kb on + strand, within PGA1_c04040 at 390.400 kb on + strand, within PGA1_c04040 at 390.400 kb on + strand, within PGA1_c04040 at 390.400 kb on + strand, within PGA1_c04040 at 390.400 kb on + strand, within PGA1_c04040 at 390.404 kb on + strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.418 kb on - strand, within PGA1_c04040 at 390.438 kb on - strand, within PGA1_c04040 at 390.439 kb on + strand, within PGA1_c04040 at 390.445 kb on + strand, within PGA1_c04040 at 390.445 kb on + strand, within PGA1_c04040 at 390.453 kb on - strand, within PGA1_c04040 at 390.461 kb on + strand, within PGA1_c04040 at 390.461 kb on + strand, within PGA1_c04040 at 390.496 kb on + strand, within PGA1_c04040 at 390.504 kb on - strand, within PGA1_c04040 at 390.597 kb on + strand, within PGA1_c04040 at 390.605 kb on - strand, within PGA1_c04040 at 390.605 kb on - strand, within PGA1_c04040 at 390.651 kb on + strand, within PGA1_c04040 at 390.654 kb on - strand, within PGA1_c04040 at 390.654 kb on - strand, within PGA1_c04040 at 390.681 kb on + strand, within PGA1_c04040 at 390.686 kb on + strand, within PGA1_c04040 at 390.686 kb on + strand, within PGA1_c04040 at 390.694 kb on - strand, within PGA1_c04040 at 390.715 kb on + strand, within PGA1_c04040 at 390.720 kb on + strand, within PGA1_c04040 at 390.720 kb on + strand, within PGA1_c04040 at 390.720 kb on + strand, within PGA1_c04040 at 390.720 kb on + strand, within PGA1_c04040 at 390.723 kb on - strand, within PGA1_c04040 at 390.728 kb on - strand, within PGA1_c04040 at 390.728 kb on - strand, within PGA1_c04040 at 390.826 kb on - strand at 390.851 kb on + strand at 390.851 kb on + strand at 390.851 kb on + strand at 390.859 kb on - strand at 390.879 kb on + strand at 390.879 kb on + strand at 390.887 kb on - strand at 390.888 kb on + strand at 390.892 kb on - strand at 390.909 kb on - strand, within PGA1_c04050 at 390.948 kb on + strand, within PGA1_c04050 at 390.999 kb on - strand, within PGA1_c04050 at 391.009 kb on + strand, within PGA1_c04050 at 391.047 kb on + strand, within PGA1_c04050 at 391.080 kb on - strand, within PGA1_c04050 at 391.080 kb on - strand, within PGA1_c04050 at 391.173 kb on + strand, within PGA1_c04050 at 391.181 kb on - strand, within PGA1_c04050 at 391.181 kb on - strand, within PGA1_c04050 at 391.181 kb on - strand, within PGA1_c04050 at 391.193 kb on - strand, within PGA1_c04050 at 391.201 kb on + strand, within PGA1_c04050 at 391.210 kb on - strand, within PGA1_c04050 at 391.225 kb on + strand, within PGA1_c04050 at 391.261 kb on + strand, within PGA1_c04050 at 391.280 kb on - strand at 391.379 kb on - strand at 391.380 kb on - strand at 391.380 kb on - strand at 391.380 kb on - strand at 391.440 kb on + strand at 391.493 kb on + strand at 391.494 kb on + strand at 391.580 kb on - strand, within PGA1_c04060 at 391.592 kb on + strand, within PGA1_c04060 at 391.642 kb on + strand, within PGA1_c04060 at 391.692 kb on + strand, within PGA1_c04060 at 391.719 kb on + strand, within PGA1_c04060 at 391.767 kb on - strand, within PGA1_c04060 at 391.808 kb on - strand, within PGA1_c04060
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 388,917 - +0.2 388,922 - +1.3 388,969 - -0.5 389,013 + +0.5 389,013 + -0.6 389,013 + -0.3 389,021 - PGA1_c04030 0.11 -0.3 389,021 - PGA1_c04030 0.11 +0.2 389,021 - PGA1_c04030 0.11 -0.6 389,033 + PGA1_c04030 0.12 -0.3 389,045 + PGA1_c04030 0.14 +0.8 389,064 + PGA1_c04030 0.16 -0.3 389,071 + PGA1_c04030 0.17 +0.8 389,168 - PGA1_c04030 0.30 +1.7 389,169 - PGA1_c04030 0.30 -0.1 389,194 + PGA1_c04030 0.33 -0.1 389,202 - PGA1_c04030 0.34 -0.0 389,202 - PGA1_c04030 0.34 -0.2 389,323 - PGA1_c04030 0.50 +1.0 389,343 + PGA1_c04030 0.53 +1.4 389,371 + PGA1_c04030 0.56 -0.5 389,379 - PGA1_c04030 0.57 +0.7 389,379 - PGA1_c04030 0.57 -1.6 389,390 - PGA1_c04030 0.59 -0.1 389,401 - PGA1_c04030 0.60 +1.2 389,408 + PGA1_c04030 0.61 -0.9 389,408 + PGA1_c04030 0.61 -1.5 389,408 + PGA1_c04030 0.61 +0.3 389,408 + PGA1_c04030 0.61 +0.1 389,408 + PGA1_c04030 0.61 +0.3 389,408 + PGA1_c04030 0.61 -0.4 389,408 + PGA1_c04030 0.61 +0.2 389,408 + PGA1_c04030 0.61 -0.7 389,408 + PGA1_c04030 0.61 +0.2 389,408 + PGA1_c04030 0.61 -0.2 389,408 + PGA1_c04030 0.61 -0.1 389,408 + PGA1_c04030 0.61 +0.7 389,416 - PGA1_c04030 0.62 +0.2 389,416 - PGA1_c04030 0.62 -0.4 389,416 - PGA1_c04030 0.62 -0.8 389,416 - PGA1_c04030 0.62 -0.2 389,416 - PGA1_c04030 0.62 +0.8 389,416 - PGA1_c04030 0.62 +1.7 389,416 - PGA1_c04030 0.62 -0.3 389,416 - PGA1_c04030 0.62 +0.5 389,416 - PGA1_c04030 0.62 -0.8 389,416 - PGA1_c04030 0.62 -1.2 389,416 - PGA1_c04030 0.62 -0.1 389,416 - PGA1_c04030 0.62 -1.5 389,456 + PGA1_c04030 0.67 +0.0 389,474 + PGA1_c04030 0.70 +0.7 389,516 + PGA1_c04030 0.75 -0.5 389,562 + PGA1_c04030 0.81 +0.1 389,619 - PGA1_c04030 0.89 -1.1 389,629 - PGA1_c04030 0.90 -0.1 389,648 - +0.3 389,717 + -0.2 389,723 - +0.7 389,725 - -0.7 389,806 + +1.1 389,819 - +0.2 389,820 + +0.4 389,820 + +0.6 389,826 + +0.8 389,828 - +1.8 389,828 - +0.5 389,828 - +0.1 389,833 - +0.7 389,834 - +1.2 389,882 - PGA1_c04040 0.11 +0.5 389,897 - PGA1_c04040 0.12 +1.4 389,919 + PGA1_c04040 0.14 +0.1 389,919 - PGA1_c04040 0.14 +1.1 389,934 + PGA1_c04040 0.15 +0.3 389,934 + PGA1_c04040 0.15 +0.4 389,942 - PGA1_c04040 0.16 +0.5 389,979 + PGA1_c04040 0.20 +1.1 389,980 + PGA1_c04040 0.20 +1.2 389,987 - PGA1_c04040 0.20 +1.5 389,988 - PGA1_c04040 0.20 +0.4 390,003 + PGA1_c04040 0.22 +0.4 390,011 - PGA1_c04040 0.23 +1.7 390,011 - PGA1_c04040 0.23 +0.9 390,034 + PGA1_c04040 0.25 -0.1 390,034 + PGA1_c04040 0.25 +0.9 390,034 + PGA1_c04040 0.25 +0.8 390,044 + PGA1_c04040 0.26 +0.9 390,052 - PGA1_c04040 0.26 +0.8 390,070 + PGA1_c04040 0.28 +2.3 390,070 + PGA1_c04040 0.28 +0.8 390,106 + PGA1_c04040 0.31 +0.7 390,114 - PGA1_c04040 0.32 +1.3 390,116 + PGA1_c04040 0.32 +0.8 390,153 + PGA1_c04040 0.36 -0.1 390,161 - PGA1_c04040 0.36 +0.8 390,161 - PGA1_c04040 0.36 +0.2 390,166 - PGA1_c04040 0.37 +0.5 390,171 + PGA1_c04040 0.37 +1.5 390,185 + PGA1_c04040 0.39 -0.8 390,193 - PGA1_c04040 0.39 -0.5 390,196 - PGA1_c04040 0.40 +1.0 390,237 - PGA1_c04040 0.44 +0.1 390,274 + PGA1_c04040 0.47 +1.2 390,274 + PGA1_c04040 0.47 -0.3 390,323 + PGA1_c04040 0.52 +1.3 390,323 + PGA1_c04040 0.52 +0.8 390,331 - PGA1_c04040 0.52 +0.6 390,337 + PGA1_c04040 0.53 -0.5 390,337 + PGA1_c04040 0.53 +1.2 390,337 + PGA1_c04040 0.53 +0.9 390,337 + PGA1_c04040 0.53 +0.4 390,345 - PGA1_c04040 0.54 +0.8 390,365 - PGA1_c04040 0.55 +1.5 390,365 - PGA1_c04040 0.55 +0.8 390,374 + PGA1_c04040 0.56 +1.1 390,400 + PGA1_c04040 0.59 +0.3 390,400 + PGA1_c04040 0.59 +0.7 390,400 + PGA1_c04040 0.59 +0.5 390,400 + PGA1_c04040 0.59 +1.5 390,400 + PGA1_c04040 0.59 +0.8 390,404 + PGA1_c04040 0.59 +0.4 390,408 - PGA1_c04040 0.59 +1.3 390,408 - PGA1_c04040 0.59 -1.1 390,408 - PGA1_c04040 0.59 +0.9 390,408 - PGA1_c04040 0.59 +0.7 390,408 - PGA1_c04040 0.59 +0.4 390,408 - PGA1_c04040 0.59 -0.1 390,418 - PGA1_c04040 0.60 +0.7 390,438 - PGA1_c04040 0.62 +0.8 390,439 + PGA1_c04040 0.62 +1.4 390,445 + PGA1_c04040 0.63 +1.3 390,445 + PGA1_c04040 0.63 +0.4 390,453 - PGA1_c04040 0.64 -0.7 390,461 + PGA1_c04040 0.64 -0.2 390,461 + PGA1_c04040 0.64 +1.2 390,496 + PGA1_c04040 0.68 -0.3 390,504 - PGA1_c04040 0.68 +0.7 390,597 + PGA1_c04040 0.77 +1.5 390,605 - PGA1_c04040 0.78 +0.7 390,605 - PGA1_c04040 0.78 +1.2 390,651 + PGA1_c04040 0.82 +1.1 390,654 - PGA1_c04040 0.82 +0.7 390,654 - PGA1_c04040 0.82 +1.3 390,681 + PGA1_c04040 0.85 +0.9 390,686 + PGA1_c04040 0.85 +0.5 390,686 + PGA1_c04040 0.85 -0.9 390,694 - PGA1_c04040 0.86 +2.4 390,715 + PGA1_c04040 0.88 +0.7 390,720 + PGA1_c04040 0.89 +1.3 390,720 + PGA1_c04040 0.89 +0.3 390,720 + PGA1_c04040 0.89 +1.2 390,720 + PGA1_c04040 0.89 +1.2 390,723 - PGA1_c04040 0.89 -0.4 390,728 - PGA1_c04040 0.89 +1.1 390,728 - PGA1_c04040 0.89 +0.8 390,826 - +1.3 390,851 + +0.4 390,851 + +0.8 390,851 + +0.7 390,859 - +0.7 390,879 + +0.7 390,879 + +0.6 390,887 - +1.3 390,888 + +0.4 390,892 - +2.0 390,909 - PGA1_c04050 0.12 +0.9 390,948 + PGA1_c04050 0.20 +1.1 390,999 - PGA1_c04050 0.31 +0.2 391,009 + PGA1_c04050 0.33 +2.3 391,047 + PGA1_c04050 0.41 +0.6 391,080 - PGA1_c04050 0.48 +0.6 391,080 - PGA1_c04050 0.48 +2.5 391,173 + PGA1_c04050 0.68 +0.8 391,181 - PGA1_c04050 0.69 +0.7 391,181 - PGA1_c04050 0.69 +1.3 391,181 - PGA1_c04050 0.69 -0.2 391,193 - PGA1_c04050 0.72 +1.0 391,201 + PGA1_c04050 0.73 +1.5 391,210 - PGA1_c04050 0.75 +1.3 391,225 + PGA1_c04050 0.78 +1.5 391,261 + PGA1_c04050 0.86 +0.2 391,280 - +1.3 391,379 - +0.4 391,380 - -0.1 391,380 - -1.2 391,380 - +0.5 391,440 + +0.7 391,493 + +0.8 391,494 + +1.7 391,580 - PGA1_c04060 0.17 +0.3 391,592 + PGA1_c04060 0.18 +1.1 391,642 + PGA1_c04060 0.25 +0.4 391,692 + PGA1_c04060 0.31 +1.1 391,719 + PGA1_c04060 0.35 +1.2 391,767 - PGA1_c04060 0.41 +0.4 391,808 - PGA1_c04060 0.46 +1.7
Or see this region's nucleotide sequence