Experiment: m.b. benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3636 and HP15_3637 are separated by 102 nucleotides HP15_3637 and HP15_3638 are separated by 158 nucleotides HP15_3638 and HP15_3639 are separated by 101 nucleotides
HP15_3636: HP15_3636 - protein containing molybdopterin oxidoreductase / molybdopterin dinucleotide-binding region, at 3,829,865 to 3,831,976
_3636
HP15_3637: HP15_3637 - tetratricopeptide TPR_2 repeat protein-like protein, at 3,832,079 to 3,832,924
_3637
HP15_3638: HP15_3638 - antibiotic biosynthesis monooxygenase domain protein, at 3,833,083 to 3,833,421
_3638
HP15_3639: HP15_3639 - tetratricopeptide repeat protein-like protein, at 3,833,523 to 3,834,347
_3639
Position (kb)
3832
3833 Strain fitness (log2 ratio)
-1
0
1 at 3831.188 kb on - strand, within HP15_3636 at 3831.202 kb on - strand, within HP15_3636 at 3831.209 kb on + strand, within HP15_3636 at 3831.212 kb on + strand, within HP15_3636 at 3831.240 kb on - strand, within HP15_3636 at 3831.302 kb on - strand, within HP15_3636 at 3831.309 kb on + strand, within HP15_3636 at 3831.353 kb on - strand, within HP15_3636 at 3831.353 kb on - strand, within HP15_3636 at 3831.410 kb on + strand at 3831.410 kb on + strand, within HP15_3636 at 3831.418 kb on - strand, within HP15_3636 at 3831.441 kb on - strand, within HP15_3636 at 3831.468 kb on + strand, within HP15_3636 at 3831.468 kb on + strand, within HP15_3636 at 3831.468 kb on + strand, within HP15_3636 at 3831.476 kb on - strand, within HP15_3636 at 3831.476 kb on - strand, within HP15_3636 at 3831.481 kb on + strand, within HP15_3636 at 3831.527 kb on - strand, within HP15_3636 at 3831.533 kb on + strand, within HP15_3636 at 3831.541 kb on - strand, within HP15_3636 at 3831.550 kb on - strand, within HP15_3636 at 3831.552 kb on + strand, within HP15_3636 at 3831.557 kb on + strand, within HP15_3636 at 3831.560 kb on - strand, within HP15_3636 at 3831.570 kb on - strand, within HP15_3636 at 3831.572 kb on + strand, within HP15_3636 at 3831.639 kb on - strand, within HP15_3636 at 3831.639 kb on - strand, within HP15_3636 at 3831.666 kb on - strand, within HP15_3636 at 3831.681 kb on + strand, within HP15_3636 at 3831.691 kb on - strand, within HP15_3636 at 3831.696 kb on + strand, within HP15_3636 at 3831.770 kb on - strand at 3831.818 kb on + strand at 3831.818 kb on + strand at 3831.818 kb on + strand at 3831.818 kb on + strand at 3831.818 kb on + strand at 3831.826 kb on - strand at 3831.826 kb on - strand at 3831.933 kb on - strand at 3831.938 kb on + strand at 3831.954 kb on + strand at 3831.970 kb on + strand at 3831.971 kb on + strand at 3832.009 kb on + strand at 3832.019 kb on + strand at 3832.027 kb on - strand at 3832.289 kb on - strand, within HP15_3637 at 3832.327 kb on + strand, within HP15_3637 at 3832.460 kb on - strand, within HP15_3637 at 3832.490 kb on - strand, within HP15_3637 at 3832.574 kb on - strand, within HP15_3637 at 3832.702 kb on + strand, within HP15_3637 at 3832.702 kb on + strand, within HP15_3637 at 3832.710 kb on - strand, within HP15_3637 at 3832.710 kb on - strand, within HP15_3637 at 3832.804 kb on + strand, within HP15_3637 at 3832.810 kb on - strand, within HP15_3637 at 3832.877 kb on + strand at 3832.992 kb on + strand at 3833.000 kb on - strand at 3833.007 kb on + strand at 3833.053 kb on + strand at 3833.055 kb on + strand at 3833.084 kb on - strand at 3833.169 kb on + strand, within HP15_3638 at 3833.267 kb on + strand, within HP15_3638 at 3833.304 kb on - strand, within HP15_3638 at 3833.307 kb on - strand, within HP15_3638 at 3833.312 kb on - strand, within HP15_3638 at 3833.324 kb on - strand, within HP15_3638 at 3833.349 kb on + strand, within HP15_3638 at 3833.430 kb on + strand at 3833.510 kb on + strand at 3833.668 kb on + strand, within HP15_3639 at 3833.673 kb on + strand, within HP15_3639 at 3833.673 kb on + strand, within HP15_3639 at 3833.875 kb on + strand, within HP15_3639
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml remove 3,831,188 - HP15_3636 0.63 -1.0 3,831,202 - HP15_3636 0.63 -0.3 3,831,209 + HP15_3636 0.64 -0.2 3,831,212 + HP15_3636 0.64 +0.7 3,831,240 - HP15_3636 0.65 -1.0 3,831,302 - HP15_3636 0.68 +0.4 3,831,309 + HP15_3636 0.68 -1.1 3,831,353 - HP15_3636 0.70 +0.4 3,831,353 - HP15_3636 0.70 -0.9 3,831,410 + -0.5 3,831,410 + HP15_3636 0.73 +0.1 3,831,418 - HP15_3636 0.74 -0.7 3,831,441 - HP15_3636 0.75 -0.9 3,831,468 + HP15_3636 0.76 -0.2 3,831,468 + HP15_3636 0.76 +0.2 3,831,468 + HP15_3636 0.76 +0.4 3,831,476 - HP15_3636 0.76 +0.1 3,831,476 - HP15_3636 0.76 +1.0 3,831,481 + HP15_3636 0.77 -0.1 3,831,527 - HP15_3636 0.79 +0.3 3,831,533 + HP15_3636 0.79 +0.5 3,831,541 - HP15_3636 0.79 -0.3 3,831,550 - HP15_3636 0.80 -0.6 3,831,552 + HP15_3636 0.80 -0.3 3,831,557 + HP15_3636 0.80 -0.1 3,831,560 - HP15_3636 0.80 +0.5 3,831,570 - HP15_3636 0.81 +1.5 3,831,572 + HP15_3636 0.81 +0.5 3,831,639 - HP15_3636 0.84 -1.2 3,831,639 - HP15_3636 0.84 +0.7 3,831,666 - HP15_3636 0.85 -0.1 3,831,681 + HP15_3636 0.86 -0.1 3,831,691 - HP15_3636 0.86 +1.0 3,831,696 + HP15_3636 0.87 +0.2 3,831,770 - -0.5 3,831,818 + +0.4 3,831,818 + -0.1 3,831,818 + -0.4 3,831,818 + -0.0 3,831,818 + +0.1 3,831,826 - -0.3 3,831,826 - +0.4 3,831,933 - +0.2 3,831,938 + +0.1 3,831,954 + +0.3 3,831,970 + -0.8 3,831,971 + +0.7 3,832,009 + +0.5 3,832,019 + +0.2 3,832,027 - +0.5 3,832,289 - HP15_3637 0.25 -0.0 3,832,327 + HP15_3637 0.29 -0.3 3,832,460 - HP15_3637 0.45 -0.1 3,832,490 - HP15_3637 0.49 -0.0 3,832,574 - HP15_3637 0.59 +0.8 3,832,702 + HP15_3637 0.74 +1.0 3,832,702 + HP15_3637 0.74 +0.3 3,832,710 - HP15_3637 0.75 +0.2 3,832,710 - HP15_3637 0.75 +0.8 3,832,804 + HP15_3637 0.86 +1.5 3,832,810 - HP15_3637 0.86 +0.4 3,832,877 + +0.5 3,832,992 + -0.1 3,833,000 - -0.4 3,833,007 + -0.3 3,833,053 + +0.3 3,833,055 + +0.2 3,833,084 - +0.1 3,833,169 + HP15_3638 0.25 +0.7 3,833,267 + HP15_3638 0.54 -0.7 3,833,304 - HP15_3638 0.65 +0.3 3,833,307 - HP15_3638 0.66 +0.2 3,833,312 - HP15_3638 0.68 +0.6 3,833,324 - HP15_3638 0.71 +0.2 3,833,349 + HP15_3638 0.78 +0.1 3,833,430 + +0.2 3,833,510 + -0.3 3,833,668 + HP15_3639 0.18 +0.0 3,833,673 + HP15_3639 0.18 -0.1 3,833,673 + HP15_3639 0.18 +0.5 3,833,875 + HP15_3639 0.43 +1.3
Or see this region's nucleotide sequence