Experiment: m.b. benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3549 and HP15_3550 are separated by 46 nucleotides HP15_3550 and HP15_3551 are separated by 41 nucleotides HP15_3551 and HP15_3552 are separated by 84 nucleotides
HP15_3549: HP15_3549 - diguanylate cyclase, at 3,738,121 to 3,739,842
_3549
HP15_3550: HP15_3550 - conserved hypothetical protein, at 3,739,889 to 3,740,920
_3550
HP15_3551: HP15_3551 - putative hydroxylase, at 3,740,962 to 3,741,636
_3551
HP15_3552: HP15_3552 - exoribonuclease R, at 3,741,721 to 3,743,706
_3552
Position (kb)
3739
3740
3741 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3738.924 kb on - strand, within HP15_3549 at 3738.966 kb on - strand, within HP15_3549 at 3738.985 kb on - strand, within HP15_3549 at 3739.004 kb on + strand, within HP15_3549 at 3739.042 kb on + strand, within HP15_3549 at 3739.071 kb on - strand, within HP15_3549 at 3739.182 kb on + strand, within HP15_3549 at 3739.197 kb on + strand, within HP15_3549 at 3739.283 kb on - strand, within HP15_3549 at 3739.435 kb on - strand, within HP15_3549 at 3739.448 kb on + strand, within HP15_3549 at 3739.526 kb on + strand, within HP15_3549 at 3739.530 kb on - strand, within HP15_3549 at 3739.534 kb on - strand, within HP15_3549 at 3739.557 kb on + strand, within HP15_3549 at 3739.797 kb on - strand at 3739.802 kb on - strand at 3739.918 kb on - strand at 3739.918 kb on - strand at 3740.011 kb on + strand, within HP15_3550 at 3740.037 kb on + strand, within HP15_3550 at 3740.045 kb on - strand, within HP15_3550 at 3740.094 kb on + strand, within HP15_3550 at 3740.095 kb on + strand, within HP15_3550 at 3740.136 kb on - strand, within HP15_3550 at 3740.177 kb on - strand, within HP15_3550 at 3740.184 kb on + strand, within HP15_3550 at 3740.252 kb on - strand, within HP15_3550 at 3740.252 kb on - strand, within HP15_3550 at 3740.285 kb on - strand, within HP15_3550 at 3740.339 kb on + strand, within HP15_3550 at 3740.384 kb on + strand, within HP15_3550 at 3740.404 kb on + strand, within HP15_3550 at 3740.412 kb on - strand, within HP15_3550 at 3740.412 kb on - strand, within HP15_3550 at 3740.420 kb on + strand, within HP15_3550 at 3740.423 kb on - strand, within HP15_3550 at 3740.494 kb on - strand, within HP15_3550 at 3740.636 kb on + strand, within HP15_3550 at 3740.651 kb on - strand, within HP15_3550 at 3740.670 kb on - strand, within HP15_3550 at 3740.704 kb on + strand, within HP15_3550 at 3740.723 kb on + strand, within HP15_3550 at 3740.796 kb on + strand, within HP15_3550 at 3740.897 kb on - strand at 3740.898 kb on - strand at 3740.898 kb on - strand at 3740.900 kb on - strand at 3740.948 kb on + strand at 3740.998 kb on - strand at 3741.027 kb on - strand at 3741.056 kb on + strand, within HP15_3551 at 3741.058 kb on + strand, within HP15_3551 at 3741.058 kb on + strand, within HP15_3551 at 3741.066 kb on - strand, within HP15_3551 at 3741.066 kb on - strand, within HP15_3551 at 3741.076 kb on - strand, within HP15_3551 at 3741.102 kb on - strand, within HP15_3551 at 3741.125 kb on - strand, within HP15_3551 at 3741.146 kb on - strand, within HP15_3551 at 3741.171 kb on - strand, within HP15_3551 at 3741.179 kb on - strand, within HP15_3551 at 3741.229 kb on + strand, within HP15_3551 at 3741.229 kb on + strand, within HP15_3551 at 3741.237 kb on - strand, within HP15_3551 at 3741.320 kb on - strand, within HP15_3551 at 3741.408 kb on + strand, within HP15_3551 at 3741.416 kb on - strand, within HP15_3551 at 3741.427 kb on - strand, within HP15_3551 at 3741.432 kb on - strand, within HP15_3551 at 3741.437 kb on - strand, within HP15_3551 at 3741.442 kb on - strand, within HP15_3551 at 3741.534 kb on - strand, within HP15_3551 at 3741.536 kb on - strand, within HP15_3551 at 3741.617 kb on - strand at 3741.673 kb on + strand at 3741.673 kb on + strand at 3741.681 kb on - strand at 3741.886 kb on + strand at 3741.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml remove 3,738,924 - HP15_3549 0.47 -0.7 3,738,966 - HP15_3549 0.49 -1.1 3,738,985 - HP15_3549 0.50 +0.2 3,739,004 + HP15_3549 0.51 +0.2 3,739,042 + HP15_3549 0.53 +0.4 3,739,071 - HP15_3549 0.55 -0.0 3,739,182 + HP15_3549 0.62 +0.6 3,739,197 + HP15_3549 0.62 -0.8 3,739,283 - HP15_3549 0.67 +0.4 3,739,435 - HP15_3549 0.76 -1.1 3,739,448 + HP15_3549 0.77 +0.1 3,739,526 + HP15_3549 0.82 +0.4 3,739,530 - HP15_3549 0.82 +0.3 3,739,534 - HP15_3549 0.82 +0.2 3,739,557 + HP15_3549 0.83 +0.8 3,739,797 - +0.1 3,739,802 - -0.6 3,739,918 - +0.4 3,739,918 - -0.1 3,740,011 + HP15_3550 0.12 -0.2 3,740,037 + HP15_3550 0.14 -0.2 3,740,045 - HP15_3550 0.15 -0.2 3,740,094 + HP15_3550 0.20 -1.2 3,740,095 + HP15_3550 0.20 -0.3 3,740,136 - HP15_3550 0.24 +1.4 3,740,177 - HP15_3550 0.28 +1.6 3,740,184 + HP15_3550 0.29 -0.1 3,740,252 - HP15_3550 0.35 +0.7 3,740,252 - HP15_3550 0.35 -0.9 3,740,285 - HP15_3550 0.38 -1.4 3,740,339 + HP15_3550 0.44 -0.0 3,740,384 + HP15_3550 0.48 -0.2 3,740,404 + HP15_3550 0.50 +0.1 3,740,412 - HP15_3550 0.51 -1.0 3,740,412 - HP15_3550 0.51 +1.0 3,740,420 + HP15_3550 0.51 +0.7 3,740,423 - HP15_3550 0.52 -0.2 3,740,494 - HP15_3550 0.59 +0.1 3,740,636 + HP15_3550 0.72 -0.6 3,740,651 - HP15_3550 0.74 -1.9 3,740,670 - HP15_3550 0.76 -0.4 3,740,704 + HP15_3550 0.79 -0.4 3,740,723 + HP15_3550 0.81 +0.8 3,740,796 + HP15_3550 0.88 +0.1 3,740,897 - +0.8 3,740,898 - +0.4 3,740,898 - +0.4 3,740,900 - +0.9 3,740,948 + +0.0 3,740,998 - -0.7 3,741,027 - +0.4 3,741,056 + HP15_3551 0.14 -0.9 3,741,058 + HP15_3551 0.14 -0.1 3,741,058 + HP15_3551 0.14 -0.5 3,741,066 - HP15_3551 0.15 +2.0 3,741,066 - HP15_3551 0.15 -0.4 3,741,076 - HP15_3551 0.17 +0.4 3,741,102 - HP15_3551 0.21 +0.5 3,741,125 - HP15_3551 0.24 +0.7 3,741,146 - HP15_3551 0.27 -0.1 3,741,171 - HP15_3551 0.31 +0.5 3,741,179 - HP15_3551 0.32 -3.4 3,741,229 + HP15_3551 0.40 -0.7 3,741,229 + HP15_3551 0.40 -0.4 3,741,237 - HP15_3551 0.41 -0.0 3,741,320 - HP15_3551 0.53 +0.2 3,741,408 + HP15_3551 0.66 +0.6 3,741,416 - HP15_3551 0.67 +0.3 3,741,427 - HP15_3551 0.69 -0.1 3,741,432 - HP15_3551 0.70 -0.2 3,741,437 - HP15_3551 0.70 -1.1 3,741,442 - HP15_3551 0.71 +0.3 3,741,534 - HP15_3551 0.85 -1.1 3,741,536 - HP15_3551 0.85 +0.1 3,741,617 - +0.4 3,741,673 + -0.4 3,741,673 + +0.2 3,741,681 - -0.1 3,741,886 + +0.2 3,741,894 - -0.6
Or see this region's nucleotide sequence