Experiment: m.b. benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3492 and HP15_3493 are separated by 215 nucleotides HP15_3493 and HP15_3494 are separated by 184 nucleotides HP15_3494 and HP15_3495 are separated by 95 nucleotides
HP15_3492: HP15_3492 - fatty acid desaturase, at 3,677,079 to 3,678,257
_3492
HP15_3493: HP15_3493 - formamidopyrimidine-DNA glycosylase, at 3,678,473 to 3,679,210
_3493
HP15_3494: HP15_3494 - conserved hypothetical protein, membrane, at 3,679,395 to 3,679,724
_3494
HP15_3495: HP15_3495 - HAD-superfamily hydrolase, subfamily IA, variant 3, at 3,679,820 to 3,680,509
_3495
Position (kb)
3678
3679
3680 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3677.527 kb on + strand, within HP15_3492 at 3677.527 kb on + strand, within HP15_3492 at 3677.527 kb on + strand, within HP15_3492 at 3677.527 kb on + strand, within HP15_3492 at 3677.573 kb on - strand, within HP15_3492 at 3677.596 kb on - strand, within HP15_3492 at 3677.609 kb on + strand, within HP15_3492 at 3677.617 kb on - strand, within HP15_3492 at 3677.648 kb on + strand, within HP15_3492 at 3677.748 kb on - strand, within HP15_3492 at 3677.766 kb on - strand, within HP15_3492 at 3677.778 kb on + strand, within HP15_3492 at 3677.793 kb on + strand, within HP15_3492 at 3677.801 kb on - strand, within HP15_3492 at 3677.848 kb on + strand, within HP15_3492 at 3677.868 kb on + strand, within HP15_3492 at 3677.876 kb on - strand, within HP15_3492 at 3677.892 kb on + strand, within HP15_3492 at 3677.894 kb on + strand, within HP15_3492 at 3677.894 kb on + strand, within HP15_3492 at 3677.912 kb on - strand, within HP15_3492 at 3677.917 kb on - strand, within HP15_3492 at 3677.947 kb on + strand, within HP15_3492 at 3677.950 kb on - strand, within HP15_3492 at 3677.950 kb on - strand, within HP15_3492 at 3677.955 kb on - strand, within HP15_3492 at 3677.962 kb on + strand, within HP15_3492 at 3677.967 kb on + strand, within HP15_3492 at 3677.970 kb on - strand, within HP15_3492 at 3677.975 kb on - strand, within HP15_3492 at 3678.020 kb on - strand, within HP15_3492 at 3678.062 kb on - strand, within HP15_3492 at 3678.081 kb on + strand, within HP15_3492 at 3678.138 kb on + strand, within HP15_3492 at 3678.144 kb on - strand at 3678.241 kb on - strand at 3678.399 kb on + strand at 3678.399 kb on + strand at 3678.399 kb on + strand at 3678.407 kb on - strand at 3678.435 kb on + strand at 3678.435 kb on + strand at 3678.435 kb on + strand at 3678.443 kb on - strand at 3678.496 kb on + strand at 3678.501 kb on + strand at 3678.501 kb on + strand at 3678.501 kb on + strand at 3678.567 kb on - strand, within HP15_3493 at 3678.654 kb on + strand, within HP15_3493 at 3678.694 kb on - strand, within HP15_3493 at 3678.699 kb on + strand, within HP15_3493 at 3678.707 kb on - strand, within HP15_3493 at 3678.713 kb on - strand, within HP15_3493 at 3678.755 kb on - strand, within HP15_3493 at 3678.907 kb on + strand, within HP15_3493 at 3678.915 kb on - strand, within HP15_3493 at 3678.952 kb on + strand, within HP15_3493 at 3678.980 kb on + strand, within HP15_3493 at 3678.992 kb on - strand, within HP15_3493 at 3678.994 kb on + strand, within HP15_3493 at 3679.002 kb on - strand, within HP15_3493 at 3679.047 kb on + strand, within HP15_3493 at 3679.055 kb on - strand, within HP15_3493 at 3679.096 kb on + strand, within HP15_3493 at 3679.104 kb on - strand, within HP15_3493 at 3679.106 kb on + strand, within HP15_3493 at 3679.361 kb on - strand at 3679.368 kb on - strand at 3679.469 kb on + strand, within HP15_3494 at 3679.491 kb on - strand, within HP15_3494 at 3679.510 kb on - strand, within HP15_3494 at 3679.544 kb on + strand, within HP15_3494 at 3679.677 kb on - strand, within HP15_3494 at 3679.707 kb on + strand at 3679.715 kb on - strand at 3679.715 kb on - strand at 3679.752 kb on - strand at 3679.828 kb on - strand at 3679.905 kb on - strand, within HP15_3495 at 3679.905 kb on - strand, within HP15_3495 at 3679.935 kb on + strand, within HP15_3495 at 3679.950 kb on - strand, within HP15_3495 at 3680.000 kb on + strand, within HP15_3495 at 3680.050 kb on - strand, within HP15_3495 at 3680.059 kb on + strand, within HP15_3495 at 3680.059 kb on + strand, within HP15_3495 at 3680.108 kb on + strand, within HP15_3495 at 3680.161 kb on + strand, within HP15_3495
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml remove 3,677,527 + HP15_3492 0.38 -0.3 3,677,527 + HP15_3492 0.38 -1.2 3,677,527 + HP15_3492 0.38 -0.6 3,677,527 + HP15_3492 0.38 +1.0 3,677,573 - HP15_3492 0.42 +0.8 3,677,596 - HP15_3492 0.44 -1.4 3,677,609 + HP15_3492 0.45 -1.0 3,677,617 - HP15_3492 0.46 -0.9 3,677,648 + HP15_3492 0.48 +2.8 3,677,748 - HP15_3492 0.57 +0.1 3,677,766 - HP15_3492 0.58 -0.4 3,677,778 + HP15_3492 0.59 +1.0 3,677,793 + HP15_3492 0.61 -0.2 3,677,801 - HP15_3492 0.61 +0.5 3,677,848 + HP15_3492 0.65 +0.1 3,677,868 + HP15_3492 0.67 -0.2 3,677,876 - HP15_3492 0.68 +0.1 3,677,892 + HP15_3492 0.69 -0.3 3,677,894 + HP15_3492 0.69 -1.1 3,677,894 + HP15_3492 0.69 -0.2 3,677,912 - HP15_3492 0.71 +0.0 3,677,917 - HP15_3492 0.71 -0.1 3,677,947 + HP15_3492 0.74 -0.2 3,677,950 - HP15_3492 0.74 +0.1 3,677,950 - HP15_3492 0.74 -0.3 3,677,955 - HP15_3492 0.74 -0.6 3,677,962 + HP15_3492 0.75 +0.7 3,677,967 + HP15_3492 0.75 +0.0 3,677,970 - HP15_3492 0.76 -2.0 3,677,975 - HP15_3492 0.76 -0.2 3,678,020 - HP15_3492 0.80 +0.3 3,678,062 - HP15_3492 0.83 -0.7 3,678,081 + HP15_3492 0.85 +0.2 3,678,138 + HP15_3492 0.90 -0.2 3,678,144 - +0.5 3,678,241 - -1.2 3,678,399 + +0.0 3,678,399 + -0.3 3,678,399 + +1.3 3,678,407 - -0.8 3,678,435 + -0.5 3,678,435 + +0.1 3,678,435 + +0.8 3,678,443 - -0.0 3,678,496 + -0.1 3,678,501 + +0.3 3,678,501 + -0.2 3,678,501 + +0.7 3,678,567 - HP15_3493 0.13 -1.6 3,678,654 + HP15_3493 0.25 -0.1 3,678,694 - HP15_3493 0.30 -0.2 3,678,699 + HP15_3493 0.31 -1.0 3,678,707 - HP15_3493 0.32 +0.4 3,678,713 - HP15_3493 0.33 +1.0 3,678,755 - HP15_3493 0.38 +0.4 3,678,907 + HP15_3493 0.59 -0.2 3,678,915 - HP15_3493 0.60 -0.6 3,678,952 + HP15_3493 0.65 +0.0 3,678,980 + HP15_3493 0.69 -0.2 3,678,992 - HP15_3493 0.70 +1.4 3,678,994 + HP15_3493 0.71 -0.6 3,679,002 - HP15_3493 0.72 +0.0 3,679,047 + HP15_3493 0.78 -1.1 3,679,055 - HP15_3493 0.79 -0.2 3,679,096 + HP15_3493 0.84 -0.8 3,679,104 - HP15_3493 0.86 -0.6 3,679,106 + HP15_3493 0.86 -0.3 3,679,361 - +0.5 3,679,368 - +0.2 3,679,469 + HP15_3494 0.22 +0.6 3,679,491 - HP15_3494 0.29 -0.3 3,679,510 - HP15_3494 0.35 -1.3 3,679,544 + HP15_3494 0.45 -0.4 3,679,677 - HP15_3494 0.85 -1.3 3,679,707 + +0.1 3,679,715 - +0.6 3,679,715 - -0.2 3,679,752 - -0.2 3,679,828 - +0.7 3,679,905 - HP15_3495 0.12 +0.2 3,679,905 - HP15_3495 0.12 -0.2 3,679,935 + HP15_3495 0.17 +0.2 3,679,950 - HP15_3495 0.19 -0.5 3,680,000 + HP15_3495 0.26 -0.6 3,680,050 - HP15_3495 0.33 -0.0 3,680,059 + HP15_3495 0.35 +1.2 3,680,059 + HP15_3495 0.35 -0.3 3,680,108 + HP15_3495 0.42 +0.4 3,680,161 + HP15_3495 0.49 -0.4
Or see this region's nucleotide sequence