Experiment: m.b. benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3376 and HP15_3377 are separated by 16 nucleotides HP15_3377 and HP15_3378 are separated by 219 nucleotides
HP15_3376: HP15_3376 - RNA polymerase-associated protein RapA, at 3,543,307 to 3,546,168
_3376
HP15_3377: HP15_3377 - sulfate transport protein CysZ, at 3,546,185 to 3,546,811
_3377
HP15_3378: HP15_3378 - VanZ family protein, at 3,547,031 to 3,547,435
_3378
Position (kb)
3546
3547 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3545.204 kb on - strand, within HP15_3376 at 3545.235 kb on + strand, within HP15_3376 at 3545.250 kb on + strand, within HP15_3376 at 3545.250 kb on + strand, within HP15_3376 at 3545.250 kb on + strand, within HP15_3376 at 3545.258 kb on - strand, within HP15_3376 at 3545.290 kb on + strand, within HP15_3376 at 3545.306 kb on + strand, within HP15_3376 at 3545.314 kb on - strand, within HP15_3376 at 3545.358 kb on - strand, within HP15_3376 at 3545.496 kb on + strand, within HP15_3376 at 3545.504 kb on - strand, within HP15_3376 at 3545.739 kb on - strand, within HP15_3376 at 3545.897 kb on - strand at 3545.897 kb on - strand at 3545.932 kb on + strand at 3545.932 kb on + strand at 3545.940 kb on - strand at 3546.010 kb on - strand at 3546.069 kb on - strand at 3546.131 kb on + strand at 3546.224 kb on - strand at 3546.228 kb on + strand at 3546.318 kb on - strand, within HP15_3377 at 3546.480 kb on + strand, within HP15_3377 at 3546.517 kb on - strand, within HP15_3377 at 3546.580 kb on + strand, within HP15_3377 at 3546.581 kb on - strand, within HP15_3377 at 3546.701 kb on - strand, within HP15_3377 at 3546.856 kb on + strand at 3546.946 kb on - strand at 3546.970 kb on + strand at 3547.002 kb on - strand at 3547.038 kb on + strand at 3547.063 kb on + strand at 3547.092 kb on + strand, within HP15_3378 at 3547.126 kb on + strand, within HP15_3378 at 3547.259 kb on + strand, within HP15_3378 at 3547.269 kb on + strand, within HP15_3378 at 3547.269 kb on + strand, within HP15_3378 at 3547.375 kb on - strand, within HP15_3378 at 3547.385 kb on + strand, within HP15_3378 at 3547.578 kb on + strand at 3547.578 kb on + strand at 3547.586 kb on - strand at 3547.586 kb on - strand at 3547.807 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml remove 3,545,204 - HP15_3376 0.66 -0.2 3,545,235 + HP15_3376 0.67 -0.9 3,545,250 + HP15_3376 0.68 -1.4 3,545,250 + HP15_3376 0.68 +0.4 3,545,250 + HP15_3376 0.68 +2.0 3,545,258 - HP15_3376 0.68 -1.8 3,545,290 + HP15_3376 0.69 -0.2 3,545,306 + HP15_3376 0.70 -0.8 3,545,314 - HP15_3376 0.70 -1.6 3,545,358 - HP15_3376 0.72 -0.7 3,545,496 + HP15_3376 0.76 -0.9 3,545,504 - HP15_3376 0.77 -1.3 3,545,739 - HP15_3376 0.85 -0.1 3,545,897 - -0.8 3,545,897 - -1.3 3,545,932 + -1.0 3,545,932 + -0.8 3,545,940 - -1.1 3,546,010 - -1.9 3,546,069 - +0.3 3,546,131 + +0.2 3,546,224 - +0.9 3,546,228 + -0.5 3,546,318 - HP15_3377 0.21 +2.4 3,546,480 + HP15_3377 0.47 -0.8 3,546,517 - HP15_3377 0.53 -0.0 3,546,580 + HP15_3377 0.63 +0.4 3,546,581 - HP15_3377 0.63 -0.7 3,546,701 - HP15_3377 0.82 -0.0 3,546,856 + -0.5 3,546,946 - -0.7 3,546,970 + +1.4 3,547,002 - +0.6 3,547,038 + +0.0 3,547,063 + -0.4 3,547,092 + HP15_3378 0.15 -0.6 3,547,126 + HP15_3378 0.23 +0.4 3,547,259 + HP15_3378 0.56 -0.4 3,547,269 + HP15_3378 0.59 +0.1 3,547,269 + HP15_3378 0.59 +0.5 3,547,375 - HP15_3378 0.85 -0.4 3,547,385 + HP15_3378 0.87 +1.2 3,547,578 + +0.3 3,547,578 + +0.2 3,547,586 - +0.5 3,547,586 - +0.4 3,547,807 - +0.2
Or see this region's nucleotide sequence