Strain Fitness in Marinobacter adhaerens HP15 around HP15_3377

Experiment: m.b. benzoic 0.29 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3376 and HP15_3377 are separated by 16 nucleotidesHP15_3377 and HP15_3378 are separated by 219 nucleotides HP15_3376: HP15_3376 - RNA polymerase-associated protein RapA, at 3,543,307 to 3,546,168 _3376 HP15_3377: HP15_3377 - sulfate transport protein CysZ, at 3,546,185 to 3,546,811 _3377 HP15_3378: HP15_3378 - VanZ family protein, at 3,547,031 to 3,547,435 _3378 Position (kb) 3546 3547Strain fitness (log2 ratio) -2 -1 0 1 2at 3545.204 kb on - strand, within HP15_3376at 3545.235 kb on + strand, within HP15_3376at 3545.250 kb on + strand, within HP15_3376at 3545.250 kb on + strand, within HP15_3376at 3545.250 kb on + strand, within HP15_3376at 3545.258 kb on - strand, within HP15_3376at 3545.290 kb on + strand, within HP15_3376at 3545.306 kb on + strand, within HP15_3376at 3545.314 kb on - strand, within HP15_3376at 3545.358 kb on - strand, within HP15_3376at 3545.496 kb on + strand, within HP15_3376at 3545.504 kb on - strand, within HP15_3376at 3545.739 kb on - strand, within HP15_3376at 3545.897 kb on - strandat 3545.897 kb on - strandat 3545.932 kb on + strandat 3545.932 kb on + strandat 3545.940 kb on - strandat 3546.010 kb on - strandat 3546.069 kb on - strandat 3546.131 kb on + strandat 3546.224 kb on - strandat 3546.228 kb on + strandat 3546.318 kb on - strand, within HP15_3377at 3546.480 kb on + strand, within HP15_3377at 3546.517 kb on - strand, within HP15_3377at 3546.580 kb on + strand, within HP15_3377at 3546.581 kb on - strand, within HP15_3377at 3546.701 kb on - strand, within HP15_3377at 3546.856 kb on + strandat 3546.946 kb on - strandat 3546.970 kb on + strandat 3547.002 kb on - strandat 3547.038 kb on + strandat 3547.063 kb on + strandat 3547.092 kb on + strand, within HP15_3378at 3547.126 kb on + strand, within HP15_3378at 3547.259 kb on + strand, within HP15_3378at 3547.269 kb on + strand, within HP15_3378at 3547.269 kb on + strand, within HP15_3378at 3547.375 kb on - strand, within HP15_3378at 3547.385 kb on + strand, within HP15_3378at 3547.578 kb on + strandat 3547.578 kb on + strandat 3547.586 kb on - strandat 3547.586 kb on - strandat 3547.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml
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3,545,204 - HP15_3376 0.66 -0.2
3,545,235 + HP15_3376 0.67 -0.9
3,545,250 + HP15_3376 0.68 -1.4
3,545,250 + HP15_3376 0.68 +0.4
3,545,250 + HP15_3376 0.68 +2.0
3,545,258 - HP15_3376 0.68 -1.8
3,545,290 + HP15_3376 0.69 -0.2
3,545,306 + HP15_3376 0.70 -0.8
3,545,314 - HP15_3376 0.70 -1.6
3,545,358 - HP15_3376 0.72 -0.7
3,545,496 + HP15_3376 0.76 -0.9
3,545,504 - HP15_3376 0.77 -1.3
3,545,739 - HP15_3376 0.85 -0.1
3,545,897 - -0.8
3,545,897 - -1.3
3,545,932 + -1.0
3,545,932 + -0.8
3,545,940 - -1.1
3,546,010 - -1.9
3,546,069 - +0.3
3,546,131 + +0.2
3,546,224 - +0.9
3,546,228 + -0.5
3,546,318 - HP15_3377 0.21 +2.4
3,546,480 + HP15_3377 0.47 -0.8
3,546,517 - HP15_3377 0.53 -0.0
3,546,580 + HP15_3377 0.63 +0.4
3,546,581 - HP15_3377 0.63 -0.7
3,546,701 - HP15_3377 0.82 -0.0
3,546,856 + -0.5
3,546,946 - -0.7
3,546,970 + +1.4
3,547,002 - +0.6
3,547,038 + +0.0
3,547,063 + -0.4
3,547,092 + HP15_3378 0.15 -0.6
3,547,126 + HP15_3378 0.23 +0.4
3,547,259 + HP15_3378 0.56 -0.4
3,547,269 + HP15_3378 0.59 +0.1
3,547,269 + HP15_3378 0.59 +0.5
3,547,375 - HP15_3378 0.85 -0.4
3,547,385 + HP15_3378 0.87 +1.2
3,547,578 + +0.3
3,547,578 + +0.2
3,547,586 - +0.5
3,547,586 - +0.4
3,547,807 - +0.2

Or see this region's nucleotide sequence