Experiment: m.b. benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3318 and HP15_3319 are separated by 95 nucleotides HP15_3319 and HP15_3320 are separated by 41 nucleotides HP15_3320 and HP15_3321 are separated by 186 nucleotides
HP15_3318: HP15_3318 - phosphomannomutase, at 3,478,636 to 3,481,278
_3318
HP15_3319: HP15_3319 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut, at 3,481,374 to 3,481,835
_3319
HP15_3320: HP15_3320 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase, at 3,481,877 to 3,483,076
_3320
HP15_3321: HP15_3321 - DNA repair protein RadC-like protein, at 3,483,263 to 3,483,937
_3321
Position (kb)
3481
3482
3483
3484 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3480.964 kb on + strand, within HP15_3318 at 3480.991 kb on + strand, within HP15_3318 at 3481.188 kb on + strand at 3481.280 kb on - strand at 3481.340 kb on - strand at 3481.340 kb on - strand at 3481.340 kb on - strand at 3481.340 kb on - strand at 3481.351 kb on + strand at 3481.841 kb on - strand at 3481.849 kb on - strand at 3483.331 kb on - strand, within HP15_3321 at 3483.406 kb on + strand, within HP15_3321 at 3483.463 kb on + strand, within HP15_3321 at 3483.479 kb on + strand, within HP15_3321 at 3483.480 kb on - strand, within HP15_3321 at 3483.674 kb on - strand, within HP15_3321 at 3483.688 kb on + strand, within HP15_3321 at 3483.787 kb on + strand, within HP15_3321 at 3483.931 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml remove 3,480,964 + HP15_3318 0.88 -0.2 3,480,991 + HP15_3318 0.89 +0.5 3,481,188 + -0.4 3,481,280 - +0.4 3,481,340 - -0.6 3,481,340 - +0.0 3,481,340 - -0.4 3,481,340 - -0.4 3,481,351 + +0.5 3,481,841 - -2.0 3,481,849 - +2.5 3,483,331 - HP15_3321 0.10 +0.9 3,483,406 + HP15_3321 0.21 +1.0 3,483,463 + HP15_3321 0.30 -0.2 3,483,479 + HP15_3321 0.32 +0.7 3,483,480 - HP15_3321 0.32 +0.9 3,483,674 - HP15_3321 0.61 -0.6 3,483,688 + HP15_3321 0.63 +0.2 3,483,787 + HP15_3321 0.78 +1.5 3,483,931 + -0.0
Or see this region's nucleotide sequence