Experiment: m.b. benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3316 and HP15_3317 are separated by 24 nucleotides HP15_3317 and HP15_3318 are separated by 57 nucleotides HP15_3318 and HP15_3319 are separated by 95 nucleotides HP15_3319 and HP15_3320 are separated by 41 nucleotides
HP15_3316: HP15_3316 - acetylornithine deacetylase, at 3,476,407 to 3,477,657
_3316
HP15_3317: HP15_3317 - acetylglutamate kinase, at 3,477,682 to 3,478,578
_3317
HP15_3318: HP15_3318 - phosphomannomutase, at 3,478,636 to 3,481,278
_3318
HP15_3319: HP15_3319 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut, at 3,481,374 to 3,481,835
_3319
HP15_3320: HP15_3320 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase, at 3,481,877 to 3,483,076
_3320
Position (kb) 3478
3479
3480
3481
3482 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3477.796 kb on + strand, within HP15_3317 at 3478.281 kb on - strand, within HP15_3317 at 3478.567 kb on + strand at 3478.691 kb on + strand at 3478.743 kb on + strand at 3478.756 kb on - strand at 3478.855 kb on + strand at 3479.272 kb on + strand, within HP15_3318 at 3479.414 kb on + strand, within HP15_3318 at 3479.448 kb on - strand, within HP15_3318 at 3479.465 kb on - strand, within HP15_3318 at 3479.504 kb on + strand, within HP15_3318 at 3479.505 kb on + strand, within HP15_3318 at 3479.512 kb on - strand, within HP15_3318 at 3479.638 kb on + strand, within HP15_3318 at 3479.723 kb on - strand, within HP15_3318 at 3479.777 kb on + strand, within HP15_3318 at 3479.806 kb on + strand, within HP15_3318 at 3479.808 kb on + strand, within HP15_3318 at 3479.860 kb on + strand, within HP15_3318 at 3479.868 kb on - strand, within HP15_3318 at 3480.090 kb on - strand, within HP15_3318 at 3480.122 kb on + strand, within HP15_3318 at 3480.257 kb on + strand, within HP15_3318 at 3480.317 kb on - strand, within HP15_3318 at 3480.324 kb on - strand, within HP15_3318 at 3480.389 kb on + strand, within HP15_3318 at 3480.499 kb on - strand, within HP15_3318 at 3480.501 kb on - strand, within HP15_3318 at 3480.501 kb on - strand, within HP15_3318 at 3480.502 kb on - strand, within HP15_3318 at 3480.506 kb on + strand, within HP15_3318 at 3480.514 kb on - strand, within HP15_3318 at 3480.593 kb on + strand, within HP15_3318 at 3480.593 kb on + strand, within HP15_3318 at 3480.601 kb on - strand, within HP15_3318 at 3480.647 kb on + strand, within HP15_3318 at 3480.793 kb on - strand, within HP15_3318 at 3480.964 kb on + strand, within HP15_3318 at 3480.991 kb on + strand, within HP15_3318 at 3481.188 kb on + strand at 3481.280 kb on - strand at 3481.340 kb on - strand at 3481.340 kb on - strand at 3481.340 kb on - strand at 3481.340 kb on - strand at 3481.351 kb on + strand at 3481.841 kb on - strand at 3481.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml remove 3,477,796 + HP15_3317 0.13 +1.0 3,478,281 - HP15_3317 0.67 -1.2 3,478,567 + -1.1 3,478,691 + +0.2 3,478,743 + -1.3 3,478,756 - +0.4 3,478,855 + +0.1 3,479,272 + HP15_3318 0.24 +1.0 3,479,414 + HP15_3318 0.29 +1.0 3,479,448 - HP15_3318 0.31 +0.7 3,479,465 - HP15_3318 0.31 -0.4 3,479,504 + HP15_3318 0.33 -0.6 3,479,505 + HP15_3318 0.33 -0.6 3,479,512 - HP15_3318 0.33 +1.0 3,479,638 + HP15_3318 0.38 +0.2 3,479,723 - HP15_3318 0.41 +0.4 3,479,777 + HP15_3318 0.43 +0.1 3,479,806 + HP15_3318 0.44 -0.5 3,479,808 + HP15_3318 0.44 -1.2 3,479,860 + HP15_3318 0.46 -0.6 3,479,868 - HP15_3318 0.47 +0.4 3,480,090 - HP15_3318 0.55 +0.6 3,480,122 + HP15_3318 0.56 +0.4 3,480,257 + HP15_3318 0.61 +0.6 3,480,317 - HP15_3318 0.64 +0.4 3,480,324 - HP15_3318 0.64 +0.2 3,480,389 + HP15_3318 0.66 -0.6 3,480,499 - HP15_3318 0.70 +1.4 3,480,501 - HP15_3318 0.71 +0.4 3,480,501 - HP15_3318 0.71 +0.5 3,480,502 - HP15_3318 0.71 -0.9 3,480,506 + HP15_3318 0.71 +0.7 3,480,514 - HP15_3318 0.71 -0.6 3,480,593 + HP15_3318 0.74 +0.8 3,480,593 + HP15_3318 0.74 -0.3 3,480,601 - HP15_3318 0.74 +1.4 3,480,647 + HP15_3318 0.76 +0.6 3,480,793 - HP15_3318 0.82 +0.0 3,480,964 + HP15_3318 0.88 -0.2 3,480,991 + HP15_3318 0.89 +0.5 3,481,188 + -0.4 3,481,280 - +0.4 3,481,340 - -0.6 3,481,340 - +0.0 3,481,340 - -0.4 3,481,340 - -0.4 3,481,351 + +0.5 3,481,841 - -2.0 3,481,849 - +2.5
Or see this region's nucleotide sequence