Experiment: m.b. benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2772 and HP15_2773 are separated by 14 nucleotides HP15_2773 and HP15_2774 are separated by 20 nucleotides HP15_2774 and HP15_2775 are separated by 57 nucleotides
HP15_2772: HP15_2772 - N-isopropylammelide isopropylaminohydrolase, at 2,925,066 to 2,926,310
_2772
HP15_2773: HP15_2773 - conserved hypothetical protein, membrane, at 2,926,325 to 2,926,780
_2773
HP15_2774: HP15_2774 - DSBA oxidoreductase, at 2,926,801 to 2,927,448
_2774
HP15_2775: HP15_2775 - transcriptional regulator protein, LysR family, at 2,927,506 to 2,928,399
_2775
Position (kb)
2926
2927
2928 Strain fitness (log2 ratio)
-1
0
1
2 at 2926.035 kb on + strand, within HP15_2772 at 2926.074 kb on - strand, within HP15_2772 at 2926.146 kb on - strand, within HP15_2772 at 2926.146 kb on - strand, within HP15_2772 at 2926.241 kb on - strand at 2926.285 kb on - strand at 2926.305 kb on - strand at 2926.316 kb on + strand at 2926.474 kb on - strand, within HP15_2773 at 2926.493 kb on + strand, within HP15_2773 at 2926.499 kb on + strand, within HP15_2773 at 2926.621 kb on + strand, within HP15_2773 at 2926.724 kb on + strand, within HP15_2773 at 2926.802 kb on + strand at 2926.872 kb on + strand, within HP15_2774 at 2926.913 kb on - strand, within HP15_2774 at 2926.988 kb on - strand, within HP15_2774 at 2927.015 kb on + strand, within HP15_2774 at 2927.028 kb on - strand, within HP15_2774 at 2927.107 kb on - strand, within HP15_2774 at 2927.107 kb on - strand, within HP15_2774 at 2927.109 kb on + strand, within HP15_2774 at 2927.241 kb on - strand, within HP15_2774 at 2927.281 kb on + strand, within HP15_2774 at 2927.301 kb on + strand, within HP15_2774 at 2927.313 kb on + strand, within HP15_2774 at 2927.363 kb on + strand, within HP15_2774 at 2927.488 kb on + strand at 2927.546 kb on - strand at 2927.556 kb on - strand at 2927.654 kb on - strand, within HP15_2775 at 2927.735 kb on - strand, within HP15_2775 at 2927.735 kb on - strand, within HP15_2775 at 2927.786 kb on + strand, within HP15_2775 at 2927.804 kb on - strand, within HP15_2775 at 2927.833 kb on - strand, within HP15_2775 at 2927.938 kb on + strand, within HP15_2775 at 2927.960 kb on + strand, within HP15_2775 at 2927.984 kb on - strand, within HP15_2775 at 2928.001 kb on - strand, within HP15_2775 at 2928.105 kb on + strand, within HP15_2775 at 2928.208 kb on + strand, within HP15_2775 at 2928.222 kb on - strand, within HP15_2775 at 2928.231 kb on - strand, within HP15_2775 at 2928.234 kb on - strand, within HP15_2775 at 2928.270 kb on + strand, within HP15_2775 at 2928.437 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml remove 2,926,035 + HP15_2772 0.78 -0.1 2,926,074 - HP15_2772 0.81 +0.2 2,926,146 - HP15_2772 0.87 -0.7 2,926,146 - HP15_2772 0.87 -0.5 2,926,241 - +1.0 2,926,285 - +1.7 2,926,305 - -0.1 2,926,316 + -0.4 2,926,474 - HP15_2773 0.33 -0.3 2,926,493 + HP15_2773 0.37 +0.5 2,926,499 + HP15_2773 0.38 +0.1 2,926,621 + HP15_2773 0.65 -1.1 2,926,724 + HP15_2773 0.88 -0.6 2,926,802 + +0.4 2,926,872 + HP15_2774 0.11 -0.3 2,926,913 - HP15_2774 0.17 -0.1 2,926,988 - HP15_2774 0.29 -0.6 2,927,015 + HP15_2774 0.33 -0.7 2,927,028 - HP15_2774 0.35 -1.1 2,927,107 - HP15_2774 0.47 +0.6 2,927,107 - HP15_2774 0.47 -0.3 2,927,109 + HP15_2774 0.48 -0.0 2,927,241 - HP15_2774 0.68 +0.2 2,927,281 + HP15_2774 0.74 -1.4 2,927,301 + HP15_2774 0.77 -1.5 2,927,313 + HP15_2774 0.79 -0.9 2,927,363 + HP15_2774 0.87 -0.4 2,927,488 + +0.2 2,927,546 - -1.1 2,927,556 - +0.8 2,927,654 - HP15_2775 0.17 +0.5 2,927,735 - HP15_2775 0.26 -0.2 2,927,735 - HP15_2775 0.26 +1.0 2,927,786 + HP15_2775 0.31 -1.4 2,927,804 - HP15_2775 0.33 -0.8 2,927,833 - HP15_2775 0.37 +0.2 2,927,938 + HP15_2775 0.48 +0.2 2,927,960 + HP15_2775 0.51 -1.1 2,927,984 - HP15_2775 0.53 +1.5 2,928,001 - HP15_2775 0.55 -0.4 2,928,105 + HP15_2775 0.67 -0.8 2,928,208 + HP15_2775 0.79 +0.1 2,928,222 - HP15_2775 0.80 -0.4 2,928,231 - HP15_2775 0.81 +2.2 2,928,234 - HP15_2775 0.81 +0.3 2,928,270 + HP15_2775 0.85 +0.4 2,928,437 - -1.7
Or see this region's nucleotide sequence