Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28460

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
2,975,446	+		PGA1_c28450	0.51	-0.2
2,975,446	+		PGA1_c28450	0.51	-1.4
2,975,494	-		PGA1_c28450	0.54	+0.6
2,975,495	-		PGA1_c28450	0.54	-0.5
2,975,495	-		PGA1_c28450	0.54	+0.5
2,975,505	-		PGA1_c28450	0.54	-0.0
2,975,532	-		PGA1_c28450	0.56	+2.5
2,975,547	-		PGA1_c28450	0.57	+0.4
2,975,583	+		PGA1_c28450	0.59	-0.1
2,975,745	+		PGA1_c28450	0.69	+0.0
2,975,758	+		PGA1_c28450	0.70	-0.2
2,975,768	+		PGA1_c28450	0.71	+0.9
2,975,773	+		PGA1_c28450	0.71	+0.2
2,975,780	+		PGA1_c28450	0.71	-0.2
2,975,893	+		PGA1_c28450	0.78	+0.0
2,975,901	-		PGA1_c28450	0.79	-0.9
2,975,909	+		PGA1_c28450	0.79	+0.5
2,975,909	+		PGA1_c28450	0.79	+0.8
2,975,917	-		PGA1_c28450	0.80	+1.4
2,975,955	+		PGA1_c28450	0.82	+0.4
2,976,017	+		PGA1_c28450	0.86	+0.9
2,976,017	+		PGA1_c28450	0.86	+0.2
2,976,050	+		PGA1_c28450	0.88	+0.0
2,976,050	+		PGA1_c28450	0.88	+0.1
2,976,058	-		PGA1_c28450	0.88	+1.2
2,976,058	-		PGA1_c28450	0.88	+0.5
2,976,063	-		PGA1_c28450	0.88	+0.4
2,976,068	-		PGA1_c28450	0.89	+0.5
2,976,068	-		PGA1_c28450	0.89	+0.3
2,976,073	-		PGA1_c28450	0.89	+0.3
2,976,160	+				+0.2
2,976,193	-				+0.4
2,976,295	+				+0.8
2,976,315	+				+0.2
2,976,315	+				+0.2
2,976,320	+				+0.8
2,976,414	+				+0.2
2,976,414	+				-1.3
2,976,414	+				+0.1
2,976,414	+				+0.0
2,976,414	+				+0.4
2,976,422	-				+2.3
2,976,422	-				+0.2
2,976,422	-				+0.2
2,976,422	-				-0.8
2,976,523	-		PGA1_c28460	0.11	+2.0
2,976,641	+		PGA1_c28460	0.22	-0.4
2,976,649	-		PGA1_c28460	0.22	+0.3
2,976,734	-		PGA1_c28460	0.30	+1.6
2,976,752	+		PGA1_c28460	0.32	+0.5
2,976,778	-		PGA1_c28460	0.34	+0.6
2,976,806	+		PGA1_c28460	0.37	+0.7
2,976,814	-		PGA1_c28460	0.37	-1.7
2,976,819	-		PGA1_c28460	0.38	-0.4
2,976,839	-		PGA1_c28460	0.40	-1.0
2,976,843	+		PGA1_c28460	0.40	+1.6
2,976,860	-		PGA1_c28460	0.42	+0.6
2,976,878	-		PGA1_c28460	0.43	+1.2
2,976,891	-		PGA1_c28460	0.44	-0.1
2,976,952	+		PGA1_c28460	0.50	-0.4
2,976,957	+		PGA1_c28460	0.50	+0.6
2,976,964	+		PGA1_c28460	0.51	-0.1
2,976,965	-		PGA1_c28460	0.51	-0.8
2,977,027	+		PGA1_c28460	0.57	-0.4
2,977,103	+		PGA1_c28460	0.64	+0.4
2,977,103	+		PGA1_c28460	0.64	-1.0
2,977,111	-		PGA1_c28460	0.64	+1.1
2,977,170	+		PGA1_c28460	0.70	+0.2
2,977,191	-		PGA1_c28460	0.72	+1.1
2,977,261	-		PGA1_c28460	0.78	+0.0
2,977,298	+		PGA1_c28460	0.81	+0.1
2,977,298	+		PGA1_c28460	0.81	+0.5
2,977,306	-		PGA1_c28460	0.82	+0.1
2,977,306	-		PGA1_c28460	0.82	-0.2
2,977,306	-		PGA1_c28460	0.82	+1.7
2,977,306	-		PGA1_c28460	0.82	+1.0
2,977,310	+		PGA1_c28460	0.82	-0.0
2,977,318	-		PGA1_c28460	0.83	-0.5
2,977,318	-		PGA1_c28460	0.83	+0.3
2,977,352	+		PGA1_c28460	0.86	+0.3
2,977,369	+		PGA1_c28460	0.88	+0.3
2,977,377	+		PGA1_c28460	0.88	+1.0
2,977,385	-		PGA1_c28460	0.89	+0.1
2,977,484	+				+0.5
2,977,487	+				+0.0
2,977,489	+				+0.7
2,977,492	-				+0.4
2,977,553	+				+0.5
2,977,590	-				-0.1
2,977,590	-				+2.2
2,977,601	+				-0.2
2,977,619	-				+2.0
2,977,619	-				+1.1
2,977,697	+		PGA1_c28470	0.22	+0.7
2,977,705	-		PGA1_c28470	0.24	-0.3
2,977,705	-		PGA1_c28470	0.24	+0.8
2,977,732	-		PGA1_c28470	0.30	+0.6
2,977,741	+		PGA1_c28470	0.33	+0.1
2,977,749	-		PGA1_c28470	0.35	+0.5
2,977,749	-		PGA1_c28470	0.35	-0.1
2,977,792	-		PGA1_c28470	0.45	+1.4
2,977,819	+		PGA1_c28470	0.52	+1.3
2,977,827	-		PGA1_c28470	0.54	+0.8
2,977,827	-		PGA1_c28470	0.54	+0.9
2,977,827	-		PGA1_c28470	0.54	+0.6
2,977,862	-		PGA1_c28470	0.62	+0.3
2,977,864	+		PGA1_c28470	0.63	+0.1
2,977,864	+		PGA1_c28470	0.63	+0.8
2,977,867	-		PGA1_c28470	0.63	-1.1
2,977,881	+		PGA1_c28470	0.67	+1.0
2,977,888	+		PGA1_c28470	0.69	+0.3
2,977,888	+		PGA1_c28470	0.69	-0.1
2,977,889	-		PGA1_c28470	0.69	+0.6
2,977,906	-		PGA1_c28470	0.73	+0.5
2,977,906	-		PGA1_c28470	0.73	+1.6
2,977,949	+		PGA1_c28470	0.84	+1.6
2,977,949	+		PGA1_c28470	0.84	+0.6
2,977,949	+		PGA1_c28470	0.84	+0.4
2,977,949	+		PGA1_c28470	0.84	+0.7
2,977,949	+		PGA1_c28470	0.84	+0.7
2,977,949	+		PGA1_c28470	0.84	+1.7
2,977,949	+		PGA1_c28470	0.84	-1.0
2,977,949	+		PGA1_c28470	0.84	+0.4
2,977,949	+		PGA1_c28470	0.84	+0.6
2,977,949	+		PGA1_c28470	0.84	-1.7
2,977,949	+		PGA1_c28470	0.84	+0.5
2,977,957	-		PGA1_c28470	0.86	+0.3
2,977,957	-		PGA1_c28470	0.86	-0.9
2,977,957	-		PGA1_c28470	0.86	-0.2
2,977,957	-		PGA1_c28470	0.86	+0.5
2,977,957	-		PGA1_c28470	0.86	+0.2
2,977,957	-		PGA1_c28470	0.86	-0.6
2,977,957	-		PGA1_c28470	0.86	+0.6
2,977,957	-		PGA1_c28470	0.86	-0.1
2,977,957	-		PGA1_c28470	0.86	+1.3
2,977,957	-		PGA1_c28470	0.86	-0.4
2,977,957	-		PGA1_c28470	0.86	+0.8
2,977,957	-		PGA1_c28470	0.86	+0.6
2,977,957	-		PGA1_c28470	0.86	-0.2
2,978,018	-				-0.2
2,978,034	+				+0.7
2,978,037	+				+0.6
2,978,062	+				+1.0
2,978,090	+				+0.3
2,978,097	-				+0.1
2,978,097	-				+0.0
2,978,136	+				+0.3
2,978,144	-				+0.1
2,978,237	-				-0.2
2,978,241	+				+0.4
2,978,241	+				-0.1
2,978,241	+				+0.0
2,978,241	+				-0.5
2,978,242	-				+0.3
2,978,249	-				-0.6
2,978,249	-				+0.2
2,978,249	-				+0.3
2,978,418	+				+0.4
2,978,418	+				+1.4
2,978,418	+				-0.6
2,978,426	-				+1.2
2,978,500	+				+0.8